diff fsd.py @ 5:69f47e0b804e draft

planemo upload for repository https://github.com/monikaheinzl/galaxyProject/tree/master/tools/fsd commit 9829d657c07703b117bed2f259ddba432b244312

--- a/fsd.py	Wed May 09 09:09:26 2018 -0400
+++ b/fsd.py	Wed May 09 09:13:46 2018 -0400
@@ -29,8 +29,8 @@
 
 def make_argparser():
     parser = argparse.ArgumentParser(description='Family Size Distribution of duplex sequencing data')
-    parser.add_argument('inputFile',
-                        help='Tabular File with three columns: ab or ba, tag and family size.')
+  #  parser.add_argument('inputFile',
+   #                     help='Tabular File with three columns: ab or ba, tag and family size.')
     parser.add_argument('--inputName1')
     parser.add_argument('--inputFile2',default=None,
                         help='Tabular File with three columns: ab or ba, tag and family size.')
@@ -53,8 +53,10 @@
     parser = make_argparser()
     args=parser.parse_args(argv[1:])
 
-    firstFile = args.inputFile
+    #firstFile = args.inputFile
     name1 = args.inputName1
+    firstFile = args.inputName1
+    
     secondFile = args.inputFile2
     name2 = args.inputName2
     thirdFile = args.inputFile3