diff fsd.xml @ 10:f7136e93604b draft

planemo upload for repository https://github.com/monikaheinzl/galaxyProject/tree/master/tools/fsd commit b9403b3ce2b7a41fa8ee1aa47909152de78cf641
author mheinzl
date Tue, 15 May 2018 13:49:34 -0400
parents 2c5fc522ded4
children b615c7e51f40
line wrap: on
line diff
--- a/fsd.xml	Wed May 09 09:41:38 2018 -0400
+++ b/fsd.xml	Tue May 15 13:49:34 2018 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!-- galaxy version 16.04 -->
-<tool id="fsd" name="Duplex Sequencing Analysis:" version="0.0.10">
+<tool id="fsd" name="Duplex Sequencing Analysis:" version="0.0.11">
     <description>Family size distribution (FSD) of tags</description>
     <requirements>
         <requirement type="package" version="2.7">python</requirement>
@@ -8,13 +8,13 @@
     </requirements>
     
     <command>
-        python2 $__tool_directory__/fsd.py --inputFile1 "$file1" --inputName1 "$file1.name" --inputFile2 "$file2" --inputName2 "$file2.name" --inputFile3 "$file3" --inputName3 "$file3.name" --inputFile4 "$file4" --inputName4 "$file4.name" --sep $separator --output_csv $output_csv --output_pdf $output_pdf
+        python2 $__tool_directory__/fsd.py --inputFile1 "$file1" --inputName1 "$file1.name" --inputFile2 "$file2" --inputName2 "$file2.name" --inputFile3 "$file3" --inputName3 "$file3.name" --inputFile4 "$file4" --inputName4 "$file4.name" --sep $separator --output_pdf $output_pdf --output_csv $output_csv 
     </command>
     <inputs>
         <param name="file1" type="data" format="tabular" label="Dataset 1: input tags" optional="false"/>
         <param name="file2" type="data" format="tabular" label="Dataset 2: input tags" optional="true"  />
         <param name="file3" type="data" format="tabular" label="Dataset 3: input tags" optional="true" />
-        <param name="file4" type="data" format="tabular" label="Dataset 4: input tags" optional="true"  help="Input in tabular format with the family size, tags and the direction of the strand ('ab' or 'ba') for each family. Name of the files can have max. 34 charcters, blanks are not allowed!"/>
+        <param name="file4" type="data" format="tabular" label="Dataset 4: input tags" optional="true"  help="Input in tabular format with the family size, tags and the direction of the strand ('ab' or 'ba') for each family. Name of the files can have max. 34 charcters!"/>
         <param name="separator" type="text" label="Separator of the CSV file." help="can be a single character" value=","/>
     </inputs>
     <outputs>
@@ -43,7 +43,7 @@
         
     This tools expects a tabular file with the tags of all families, their sizes and information about forward (ab) and reverse (ba) strands. 
     
-    **!!! Name of the files can have max. 34 charcters, blanks are not allowed !!!**
+    **!!! Name of the files can have max. 34 charcters !!!**
     
     +-----+----------------------------+----+
     | 1   | AAAAAAAAAAAATGTTGGAATCTT   | ba |