# HG changeset patch
# User mheinzl
# Date 1525872006 14400
# Node ID c4b8222dce298d3b33716e7852fde3928299467c
# Parent  69f47e0b804e8cfcea7f4f698644c70175fec103
planemo upload for repository https://github.com/monikaheinzl/galaxyProject/tree/master/tools/fsd commit 1667d50b521325eea1eada1b16029b1ba1379c5f

diff -r 69f47e0b804e -r c4b8222dce29 fsd.py
--- a/fsd.py	Wed May 09 09:13:46 2018 -0400
+++ b/fsd.py	Wed May 09 09:20:06 2018 -0400
@@ -29,8 +29,8 @@
 
 def make_argparser():
     parser = argparse.ArgumentParser(description='Family Size Distribution of duplex sequencing data')
-  #  parser.add_argument('inputFile',
-   #                     help='Tabular File with three columns: ab or ba, tag and family size.')
+    parser.add_argument('--inputFile1',
+                        help='Tabular File with three columns: ab or ba, tag and family size.')
     parser.add_argument('--inputName1')
     parser.add_argument('--inputFile2',default=None,
                         help='Tabular File with three columns: ab or ba, tag and family size.')
@@ -53,9 +53,9 @@
     parser = make_argparser()
     args=parser.parse_args(argv[1:])
 
-    #firstFile = args.inputFile
+    firstFile = args.inputFile1
     name1 = args.inputName1
-    firstFile = args.inputName1
+    #firstFile = args.inputName1
     
     secondFile = args.inputFile2
     name2 = args.inputName2
diff -r 69f47e0b804e -r c4b8222dce29 fsd.xml
--- a/fsd.xml	Wed May 09 09:13:46 2018 -0400
+++ b/fsd.xml	Wed May 09 09:20:06 2018 -0400
@@ -1,13 +1,13 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!-- galaxy version 16.04 -->
-<tool id="fsd" name="Duplex Sequencing Analysis:" version="0.0.6">
+<tool id="fsd" name="Duplex Sequencing Analysis:" version="0.0.7">
     <description>Family size distribution (FSD) of tags</description>
     <requirements>
         <requirement type="package" version="1.4">matplotlib</requirement>
     </requirements>
     
     <command>
-        python $__tool_directory__/fsd.py --inputName1 $file1.name --inputFile2 $file2.name --inputName2 $file2.name --inputFile3 $file3.name --inputName3 $file3.name --inputFile4 $file4.name --inputName4 $file4.name --sep $separator --output_csv $output_csv --output_pdf $output_pdf
+        python $__tool_directory__/fsd.py --inputFile1 "$file1" --inputName1 "$file1.name" --inputFile2 "$file2" --inputName2 "$file2.name" --inputFile3 "$file3" --inputName3 "$file3.name" --inputFile4 "$file4" --inputName4 "$file4.name" --sep $separator --output_csv $output_csv --output_pdf $output_pdf
     </command>
     <inputs>
         <param name="file1" type="data" format="tabular" label="Dataset 1: input tags" optional="false"/>