Mercurial > repos > mheinzl > fsd_bvsa
comparison fsd_beforevsafter.xml @ 4:2c6cff101f49 draft
planemo upload for repository https://github.com/monikaheinzl/galaxyProject/tree/master/tools/fsd_beforevsafter commit 434a4c969d587d4b14cc1642e38b806af2151953
| author | mheinzl |
|---|---|
| date | Tue, 15 May 2018 14:28:12 -0400 |
| parents | 327c40a821ed |
| children | 1eae0524b285 |
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| 3:327c40a821ed | 4:2c6cff101f49 |
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| 1 <?xml version="1.0" encoding="UTF-8"?> | 1 <?xml version="1.0" encoding="UTF-8"?> |
| 2 <tool id="fsd_beforevsafter" name="Duplex Sequencing Analysis:" version="0.0.4"> | 2 <tool id="fsd_beforevsafter" name="Duplex Sequencing Analysis:" version="0.0.5"> |
| 3 <requirements> | 3 <requirements> |
| 4 <!-- galaxy version 16.04 --> | 4 <!-- galaxy version 16.04 --> |
| 5 <requirement type="package" version="2.7">python</requirement> | 5 <requirement type="package" version="2.7">python</requirement> |
| 6 <requirement type="package" version="1.4">matplotlib</requirement> | 6 <requirement type="package" version="1.4">matplotlib</requirement> |
| 7 <requirement type="package" version="1.7">biopython</requirement> | 7 <requirement type="package" version="1.71">biopython</requirement> |
| 8 | 8 |
| 9 </requirements> | 9 </requirements> |
| 10 <description>Family size distribution (FSD) of tags from various steps of the Du Novo pipeline</description> | 10 <description>Family size distribution (FSD) of tags from various steps of the Du Novo pipeline</description> |
| 11 <command> | 11 <command> |
| 12 python2 $__tool_directory__/fsd_beforevsafter.py --inputFile_SSCS "$file1" --inputName1 "$file1.name" --makeDCS "$makeDCS" --afterTrimming "$afterTrimming" --alignedTags "$alignedTags" --sep $separator --output_pdf $output_pdf --output_csv $output_csv | 12 python2 $__tool_directory__/fsd_beforevsafter.py --inputFile_SSCS "$file1" --inputName1 "$file1.name" --makeDCS "$makeDCS" --afterTrimming "$afterTrimming" --alignedTags "$alignedTags" --sep $separator --output_pdf $output_pdf --output_csv $output_csv |