comparison fsd_regions.xml @ 3:85d870b8ae92 draft

planemo upload for repository https://github.com/monikaheinzl/galaxyProject/tree/master/tools/fsd_regions commit 4c46f2914e9da5c310feb886b64fca8eb09ea767

2:2631864873d7

<?xml version="1.0" encoding="UTF-8"?>
<tool id="fsd_regions" name="Duplex Sequencing Analysis:" version="0.0.3">
    <requirements>
        <requirement type="package" version="2.7">python</requirement>
        <requirement type="package" version="1.4">matplotlib</requirement>
    </requirements>
    <description>Family size distribution (FSD) of aligned tags to reference genome</description>
    <command>
        python2 $__tool_directory__/fsd_regions.py --inputFile "$file1" --inputName1 "$file1.name" --ref_genome "$file2" --sep $separator --output_pdf $output_pdf --output_csv $output_csv 
    </command>
    <inputs>
        <param name="file1" type="data" format="tabular" label="Dataset 1: input tags of whole dataset" optional="false" help="Input in tabular format with the family size, tags and the direction of the strand ('ab' or 'ba') for each family."/>

3:85d870b8ae92

<?xml version="1.0" encoding="UTF-8"?>
<tool id="fsd_regions" name="Duplex Sequencing Analysis: fsd_regions" version="0.0.4">
    <requirements>
        <requirement type="package" version="2.7">python</requirement>
        <requirement type="package" version="1.4">matplotlib</requirement>
    </requirements>
    <description>Family size distribution (FSD) of user-specified regions</description>
    <command>
        python2 $__tool_directory__/fsd_regions.py --inputFile "$file1" --inputName1 "$file1.name" --ref_genome "$file2" --sep $separator --output_pdf $output_pdf --output_csv $output_csv 
    </command>
    <inputs>
        <param name="file1" type="data" format="tabular" label="Dataset 1: input tags of whole dataset" optional="false" help="Input in tabular format with the family size, tags and the direction of the strand ('ab' or 'ba') for each family."/>