Mercurial > repos > mheinzl > fsd_regions
comparison fsd_regions.xml @ 12:fa3ff1c5280d draft
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd_regions commit 5efe7fe08c0603254e1eeafdbc0043e8d94a6c01
| author | mheinzl |
|---|---|
| date | Mon, 26 Nov 2018 04:59:56 -0500 |
| parents | 04c544617b44 |
| children |
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| 11:37db9decb5d0 | 12:fa3ff1c5280d |
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| 2 <tool id="fsd_regions" name="FSD regions" version="1.0.1"> | 2 <tool id="fsd_regions" name="FSD regions" version="1.0.1"> |
| 3 <description>:Family size distribution (FSD) of user-specified regions in the reference genome</description> | 3 <description>:Family size distribution (FSD) of user-specified regions in the reference genome</description> |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="2.7">python</requirement> | 5 <requirement type="package" version="2.7">python</requirement> |
| 6 <requirement type="package" version="1.4.0">matplotlib</requirement> | 6 <requirement type="package" version="1.4.0">matplotlib</requirement> |
| 7 <requirement type="package" version="0.15">pysam</requirement> | |
| 7 </requirements> | 8 </requirements> |
| 8 <command> | 9 <command> |
| 9 python2 '$__tool_directory__/fsd_regions.py' --inputFile '$file1' --inputName1 '$file1.name' --bamFile '$file2' --rangesFile '$file3' --output_pdf $output_pdf --output_tabular $output_tabular | 10 python2 '$__tool_directory__/fsd_regions.py' --inputFile '$file1' --inputName1 '$file1.name' --bamFile '$file2' --rangesFile '$file3' --output_pdf $output_pdf --output_tabular $output_tabular |
| 10 </command> | 11 </command> |
| 11 <inputs> | 12 <inputs> |