# HG changeset patch
# User mheinzl
# Date 1543225345 18000
# Node ID 04c544617b44d6a298776d002ad959ea00547e20
# Parent  eabfdc012d7bdfa482e6f6a69b18289ab9fd0c0a
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd_regions commit 82b53a26581a2296ad272bbba1e80934864dfa58-dirty

diff -r eabfdc012d7b -r 04c544617b44 fsd_regions.xml
--- a/fsd_regions.xml	Mon Nov 26 04:25:26 2018 -0500
+++ b/fsd_regions.xml	Mon Nov 26 04:42:25 2018 -0500
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<tool id="fsd_regions" name="Duplex Sequencing Analysis: fsd_regions" version="1.0.1">
-    <description>Family size distribution (FSD) of user-specified regions in the reference genome</description>
+<tool id="fsd_regions" name="FSD regions" version="1.0.1">
+    <description>:Family size distribution (FSD) of user-specified regions in the reference genome</description>
     <requirements>
         <requirement type="package" version="2.7">python</requirement>
         <requirement type="package" version="1.4.0">matplotlib</requirement>
@@ -35,7 +35,7 @@
         
 **Input**
         
-**Dataset 1:** This tools expects a tabular file with the tags of all families, their sizes and information about forward (ab) and reverse (ba) strands. 
+**Dataset 1:** This tools expects a tabular file with the tags of all families, their sizes and information about forward (ab) and reverse (ba) strands::
 
     1  AAAAAAAAAAAATGTTGGAATCTT ba
    10  AAAAAAAAAAAGGCGGTCCACCCC ab
@@ -43,7 +43,7 @@
     
 **Dataset 2:** BAM file of the aligned reads. This file can be obtained by the tool "Map with BWA-MEM".
 
-**Dataset 3 (optional):** BED file with start and stop positions of the regions. If it is not provided, then all aligned reads of the BAM file are used in the distribution of family sizes. 
+**Dataset 3 (optional):** BED file with start and stop positions of the regions. If it is not provided, then all aligned reads of the BAM file are used in the distribution of family sizes::
 
    ACH_TDII   90    633
    ACH_TDII  659   1140