annotate test-data/output_file2.tabular @ 19:2e9f7ea7ae93 draft

planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit dfaab79252a858e8df16bbea3607ebf1b6962e5a-dirty

Test_data2
number of tags per file	20 (from 20) against 20

Hamming distance separated by family size
	FS=1	FS=2	FS=3	FS=4	FS=5-10	FS>10	sum	
HD=1	2	0	0	0	1	0	3	
HD=6	0	0	0	1	0	1	2	
HD=7	2	0	1	1	2	1	7	
HD=8	1	0	1	0	2	1	5	
HD=9	1	0	0	0	0	1	2	
HD=10	1	0	0	0	0	0	1	
sum	7	0	2	2	5	4	20	

Family size distribution separated by Hamming distance
	HD=1	HD=2	HD=3	HD=4	HD=5-8	HD>8	sum	
FS=1	2	0	0	0	3	2	7	
FS=3	0	0	0	0	2	0	2	
FS=4	0	0	0	0	2	0	2	
FS=5	0	0	0	0	1	0	1	
FS=6	0	0	0	0	1	0	1	
FS=7	1	0	0	0	0	0	1	
FS=8	0	0	0	0	1	0	1	
FS=9	0	0	0	0	1	0	1	
FS=12	0	0	0	0	2	0	2	
FS=13	0	0	0	0	1	1	2	
sum	3	0	0	0	14	3	20	


max. family size:	13
absolute frequency:	2
relative frequency:	0.1

The hamming distances were calculated by comparing each half of all tags against the tag(s) with the minimum Hamming distance per half.
It is possible that one tag can have the minimum HD from multiple tags, so the sample size in this calculation differs from the sample size entered by the user.
actual number of tags with min HD = 79 (sample size by user = 20)
length of one part of the tag = 12

Hamming distance of each half in the tag
	HD a	HD b'	HD b	HD a'	HD a+b	sum	
HD=0	20	0	0	5	0	25	
HD=1	22	4	4	3	8	41	
HD=2	9	2	0	9	2	22	
HD=3	0	0	0	10	0	10	
HD=4	0	0	2	1	0	3	
HD=5	0	0	5	0	0	5	
HD=6	0	5	7	0	3	15	
HD=7	0	7	10	0	10	27	
HD=8	0	6	0	0	10	16	
HD=9	0	7	0	0	17	24	
HD=10	0	11	0	0	13	24	
HD=11	0	8	0	0	7	15	
HD=12	0	1	0	0	5	6	
HD=13	0	0	0	0	4	4	
sum	51	51	28	28	79	237	

Absolute delta Hamming distances within the tag
	FS=1	FS=2	FS=3	FS=4	FS=5-10	FS>10	sum	
diff=1	5	0	0	1	5	0	11	
diff=2	4	0	0	0	0	0	4	
diff=3	1	0	2	1	1	0	5	
diff=4	1	0	1	0	2	1	5	
diff=5	2	0	0	0	4	6	12	
diff=6	1	0	0	1	1	7	10	
diff=7	2	0	1	0	0	0	3	
diff=8	0	0	1	0	1	3	5	
diff=9	6	0	0	1	3	4	14	
diff=10	4	0	0	0	3	2	9	
diff=11	0	0	0	0	0	1	1	
sum	26	0	5	4	20	24	79	

Chimera analysis: relative delta Hamming distances
	FS=1	FS=2	FS=3	FS=4	FS=5-10	FS>10	sum	
diff=0.1	1	0	0	1	1	0	3	
diff=0.3	3	0	2	0	0	0	5	
diff=0.4	1	0	0	1	3	0	5	
diff=0.5	0	0	1	0	0	1	2	
diff=0.6	1	0	0	0	3	7	11	
diff=0.7	1	0	0	0	1	5	7	
diff=0.8	10	0	0	0	2	9	21	
diff=1.0	9	0	2	2	10	2	25	
sum	26	0	5	4	20	24	79	

Chimeras:
All tags were filtered: only those tags where at least one half is identical with the half of the min. tag are kept.
So the hamming distance of the non-identical half is compared.
Hamming distances of non-zero half
	FS=1	FS=2	FS=3	FS=4	FS=5-10	FS>10	sum	
HD=1	4	0	0	0	4	0	8	
HD=2	2	0	0	0	0	0	2	
HD=6	0	0	0	1	0	2	3	
HD=7	1	0	1	0	0	0	2	
HD=8	0	0	1	0	1	0	2	
HD=9	1	0	0	1	2	0	4	
HD=10	1	0	0	0	3	0	4	
sum	9	0	2	2	10	2	25