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comparison test-data/output_file.tabular @ 19:2e9f7ea7ae93 draft

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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit dfaab79252a858e8df16bbea3607ebf1b6962e5a-dirty
author mheinzl
date Mon, 08 Oct 2018 05:56:04 -0400
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children 7e570ba56b83
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18:a8581bf627fd 19:2e9f7ea7ae93
1 Test_data
2 number of tags per file 20 (from 20) against 20
3
4 Hamming distance separated by family size
5 FS=1 FS=2 FS=3 FS=4 FS=5-10 FS>10 sum
6 HD=1 5 1 1 1 1 0 9
7 HD=6 3 0 0 0 0 0 3
8 HD=7 4 0 0 0 1 0 5
9 HD=8 2 0 0 1 0 0 3
10 sum 14 1 1 2 2 0 20
11
12 Family size distribution separated by Hamming distance
13 HD=1 HD=2 HD=3 HD=4 HD=5-8 HD>8 sum
14 FS=1 5 0 0 0 9 0 14
15 FS=2 1 0 0 0 0 0 1
16 FS=3 1 0 0 0 0 0 1
17 FS=4 1 0 0 0 1 0 2
18 FS=6 1 0 0 0 0 0 1
19 FS=7 0 0 0 0 1 0 1
20 sum 9 0 0 0 11 0 20
21
22
23 max. family size: 7
24 absolute frequency: 1
25 relative frequency: 0.05
26
27 The hamming distances were calculated by comparing each half of all tags against the tag(s) with the minimum Hamming distance per half.
28 It is possible that one tag can have the minimum HD from multiple tags, so the sample size in this calculation differs from the sample size entered by the user.
29 actual number of tags with min HD = 171 (sample size by user = 20)
30 length of one part of the tag = 12
31
32 Hamming distance of each half in the tag
33 HD a HD b' HD b HD a' HD a+b sum
34 HD=0 146 0 8 4 0 158
35 HD=1 0 2 2 21 11 36
36 HD=2 0 0 0 0 1 1
37 HD=5 0 0 4 0 0 4
38 HD=6 0 2 2 0 6 10
39 HD=7 0 16 9 0 21 46
40 HD=8 0 20 0 0 26 46
41 HD=9 0 50 0 0 50 100
42 HD=10 0 30 0 0 30 60
43 HD=11 0 18 0 0 18 36
44 HD=12 0 8 0 0 8 16
45 sum 146 146 25 25 171 513
46
47 Absolute delta Hamming distances within the tag
48 FS=1 FS=2 FS=3 FS=4 FS=5-10 FS>10 sum
49 diff=0 1 0 0 0 0 0 1
50 diff=1 6 1 2 1 1 0 11
51 diff=4 4 0 0 0 0 0 4
52 diff=5 2 0 0 0 0 0 2
53 diff=6 6 0 0 1 1 0 8
54 diff=7 15 0 1 0 3 0 19
55 diff=8 15 2 0 1 2 0 20
56 diff=9 37 4 1 4 4 0 50
57 diff=10 22 2 1 4 1 0 30
58 diff=11 8 1 1 5 3 0 18
59 diff=12 6 1 0 1 0 0 8
60 sum 122 11 6 17 15 0 171
61
62 Chimera analysis: relative delta Hamming distances
63 FS=1 FS=2 FS=3 FS=4 FS=5-10 FS>10 sum
64 diff=0.0 1 0 0 0 0 0 1
65 diff=0.7 6 0 0 0 0 0 6
66 diff=0.8 4 0 0 1 1 0 6
67 diff=1.0 111 11 6 16 14 0 158
68 sum 122 11 6 17 15 0 171
69
70 Chimeras:
71 All tags were filtered: only those tags where at least one half is identical with the half of the min. tag are kept.
72 So the hamming distance of the non-identical half is compared.
73 Hamming distances of non-zero half
74 FS=1 FS=2 FS=3 FS=4 FS=5-10 FS>10 sum
75 HD=1 6 1 2 1 1 0 11
76 HD=6 2 0 0 0 0 0 2
77 HD=7 15 0 1 0 3 0 19
78 HD=8 15 2 0 1 2 0 20
79 HD=9 37 4 1 4 4 0 50
80 HD=10 22 2 1 4 1 0 30
81 HD=11 8 1 1 5 3 0 18
82 HD=12 6 1 0 1 0 0 8
83 sum 111 11 6 16 14 0 158
84
85