comparison hd.xml @ 16:ea67840d0514 draft

planemo upload for repository https://github.com/monikaheinzl/galaxyProject/tree/master/tools/hd commit 797ff8e0461392fe4542de33e7b58f9e0abefc7c

15:cf7874bb4934

<?xml version="1.0" encoding="UTF-8"?>
<tool id="hd" name="Duplex Sequencing Analysis: hd" version="0.0.16">
    <requirements>
        <requirement type="package" version="2.7">python</requirement>
        <requirement type="package" version="1.4">matplotlib</requirement>
    </requirements>
    <description>Hamming distance (HD) analysis of tags</description>

        <param name="maxFS" type="integer" label="max family size of the tags" min="0" value="0" help="filters the tags after their family size: Families with larger size are skipped. If max. family size is 0, no upper bound is defined and the maximum family size in the analysis will be the maximum family size of the whole dataset. Default: max. family size = 0."/>
        <param name="separator" type="text" label="Separator of the CSV file." help="can be a single character" value=","/>
        <param name="onlyDCS" type="boolean" label="only DCS in the analysis?" truevalue="" falsevalue="--only_DCS" checked="False" help="Only tags, which have a partner tag in the dataset, are included in the analysis."/>
        <param name="subsetTag" type="integer" label="shorten tag in the analysis?" value="0" help="An analysis with shorter tag length, which is specified by this parameter, is simulated. If this parameter is 0 (by default), the tag with its original length is used in the analysis."/>
        <param name="nproc" type="integer" label="number of processors" value="8" help="Number of processor used for computing."/>
        <param name="nr_above_bars" type="boolean" label="include numbers above bars?" truevalue="--nr_above_bars" falsevalue="" checked="False" help="The absolute and relative values of the bar can be included or removed in the plot. "/>
 
    </inputs>
    <outputs>
        <data name="output_csv" format="csv"/>
        <data name="output_csv2" format="csv">

16:ea67840d0514

<?xml version="1.0" encoding="UTF-8"?>
<tool id="hd" name="Duplex Sequencing Analysis: hd" version="0.0.17">
    <requirements>
        <requirement type="package" version="2.7">python</requirement>
        <requirement type="package" version="1.4">matplotlib</requirement>
    </requirements>
    <description>Hamming distance (HD) analysis of tags</description>

        <param name="maxFS" type="integer" label="max family size of the tags" min="0" value="0" help="filters the tags after their family size: Families with larger size are skipped. If max. family size is 0, no upper bound is defined and the maximum family size in the analysis will be the maximum family size of the whole dataset. Default: max. family size = 0."/>
        <param name="separator" type="text" label="Separator of the CSV file." help="can be a single character" value=","/>
        <param name="onlyDCS" type="boolean" label="only DCS in the analysis?" truevalue="" falsevalue="--only_DCS" checked="False" help="Only tags, which have a partner tag in the dataset, are included in the analysis."/>
        <param name="subsetTag" type="integer" label="shorten tag in the analysis?" value="0" help="An analysis with shorter tag length, which is specified by this parameter, is simulated. If this parameter is 0 (by default), the tag with its original length is used in the analysis."/>
        <param name="nproc" type="integer" label="number of processors" value="8" help="Number of processor used for computing."/>
        <param name="nr_above_bars" type="boolean" label="include numbers above bars?" truevalue="--nr_above_bars" falsevalue="" checked="True" help="The absolute and relative values of the bar can be included or removed in the plot. "/>
 
    </inputs>
    <outputs>
        <data name="output_csv" format="csv"/>
        <data name="output_csv2" format="csv">