diff hd.xml @ 22:7e570ba56b83 draft

planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty

--- a/hd.xml	Fri Dec 14 05:03:24 2018 -0500
+++ b/hd.xml	Wed Feb 27 04:50:56 2019 -0500
@@ -7,7 +7,7 @@
     </requirements>
     <command>
         python2 '$__tool_directory__/hd.py' --inputFile '$inputFile' --inputName1 '$inputFile.name' --sample_size $sampleSize --subset_tag $subsetTag --nproc $nproc $onlyDCS --minFS $minFS --maxFS $maxFS
-		$nr_above_bars --output_pdf $output_pdf --output_tabular $output_tabular
+		$nr_above_bars --output_pdf $output_pdf --output_tabular $output_tabular --output_chimeras_tabular $output_chimeras_tabular
     </command>
     <inputs>
         <param name="inputFile" type="data" format="tabular" label="Dataset 1: input tags" optional="false" help="Input in tabular format with the family size, tag and the direction of the strand ('ab' or 'ba') for each family."/>
@@ -21,8 +21,10 @@
  
     </inputs>
     <outputs>
+        <data name="output_pdf" format="pdf" />
         <data name="output_tabular" format="tabular"/>
-        <data name="output_pdf" format="pdf" />
+        <data name="output_chimeras_tabular" format="tabular"/>
+		
     </outputs>
     <tests>
         <test>
@@ -30,6 +32,7 @@
             <param name="sampleSize" value="0"/>
             <output name="output_pdf" file="output_file.pdf" lines_diff="6"/>
             <output name="output_tabular" file="output_file.tabular"/>
+            <output name="output_chimeras_tabular" file="output_file_chimeras.tabular"/>
         </test>
     </tests>
     <help> <![CDATA[
@@ -80,7 +83,7 @@
     
 **Output**
     
-The output is one PDF file with the plots of the Hamming distance and a tabular file with the data of the plot for each dataset.
+The output is one PDF file with the plots of the Hamming distance, a tabular file with the data of the plot for each dataset and a tabular file with tags that are chimeric.
     
     
 **About Author**