Mercurial > repos > mheinzl > hd

view test-data/output_file_chimeras.tabular @ 24:3bc67ac46740 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
author mheinzl
date Wed, 27 Feb 2019 09:17:04 -0500
parents 7e570ba56b83
children
line wrap: on
line source

sample tag	similar tag
AAAAAAAAAAAA AACCAAAACTTC	*AAAAAAAAAAAA* TCTTTCTTTGAG
AAAAAAAAAAAA ACCAGGCGTCGA	*AAAAAAAAAAAA* AACCAAAACTTC, *AAAAAAAAAAAA* AGCTCCACGTTG, *AAAAAAAAAAAA* CAGTGTTGAGAC, *AAAAAAAAAAAA* TCTTTCTTTGAG, *AAAAAAAAAAAA* TTGGGTTCCTTA
AAAAAAAAAAAA AGCTCCACGTTG	*AAAAAAAAAAAA* CAGTGTTGAGAC, *AAAAAAAAAAAA* CCGCTCCTCACA
AAAAAAAAAAAA ATCGTGGTTTGT	*AAAAAAAAAAAA* CAGTGTTGAGAC, AAAAAAAAAAAG *ATCGTGGTTTGT*
AAAAAAAAAAAA ATTCACCCTTGT	*AAAAAAAAAAAA* CAGTGTTGAGAC, AAAAAAAAAAAT *ATTCACCCTTGT*
AAAAAAAAAAAA CACACTTAACTT	*AAAAAAAAAAAA* ATTCACCCTTGT, *AAAAAAAAAAAA* CCGCTCCTCACA, *AAAAAAAAAAAA* TCTTTCTTTGAG
AAAAAAAAAAAA CAGTGTTGAGAC	*AAAAAAAAAAAA* ATCGTGGTTTGT, *AAAAAAAAAAAA* ATTCACCCTTGT, *AAAAAAAAAAAA* CACACTTAACTT
AAAAAAAAAAAA CCGCTCCTCACA	*AAAAAAAAAAAA* AGCTCCACGTTG, *AAAAAAAAAAAA* CACACTTAACTT
AAAAAAAAAAAA GGCAACACAGAA	*AAAAAAAAAAAA* ATCGTGGTTTGT, AAAAAAAAAAAG *GGCAACACAGAA*
AAAAAAAAAAAA TCTTTCTTTGAG	*AAAAAAAAAAAA* AACCAAAACTTC, AAAAAAAAAAAG *TCTTTCTTTGAG*
AAAAAAAAAAAA TTGGGTTCCTTA	*AAAAAAAAAAAA* ACCAGGCGTCGA, *AAAAAAAAAAAA* GGCAACACAGAA, *AAAAAAAAAAAA* TCTTTCTTTGAG
AAAAAAAAAAAG AGTCGCACCCAG	*AAAAAAAAAAAG* ATCGTGGTTTGT
AAAAAAAAAAAG ATCGTGGTTTGT	*AAAAAAAAAAAG* TAGCCCTAAACG, AAAAAAAAAAAA *ATCGTGGTTTGT*
AAAAAAAAAAAG CGCAACACAGAA	*AAAAAAAAAAAG* ATCGTGGTTTGT
AAAAAAAAAAAG GGCAACACAGAA	*AAAAAAAAAAAG* ATCGTGGTTTGT, AAAAAAAAAAAA *GGCAACACAGAA*
AAAAAAAAAAAG TAGCCCTAAACG	*AAAAAAAAAAAG* ATCGTGGTTTGT
AAAAAAAAAAAG TCTTTCTTTGAG	*AAAAAAAAAAAG* ATCGTGGTTTGT, *AAAAAAAAAAAG* CGCAACACAGAA, *AAAAAAAAAAAG* GGCAACACAGAA, AAAAAAAAAAAA *TCTTTCTTTGAG*
AAAAAAAAAAAT ATCATAGACTCT	*AAAAAAAAAAAT* ATTCACCCTTGT
AAAAAAAAAAAT ATTCACCCTTGT	*AAAAAAAAAAAT* ATCATAGACTCT, AAAAAAAAAAAA *ATTCACCCTTGT*
AAAAAAAAAAAT ATTCGAAAGTTA	*AAAAAAAAAAAT* ATCATAGACTCT, *AAAAAAAAAAAT* ATTCACCCTTGT
This file contains all tags that were identified as chimeras as the first column and the corresponding tags which returned a Hamming distance of zero in either the first or the second half of the sample tag as the second column.
 The tags were separated by an empty space into their halves and the * marks the identical half.