comparison read2mut.py @ 16:30aec05d04d3 draft

planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8

15:6f4c61123a36

    parser.add_argument('--trim', type=int, default=10,
                        help='Integer threshold for assigning mutations at start and end of reads to lower tier. Default 10.')
    parser.add_argument('--chimera_correction', action="store_true",
                        help='Count chimeric variants and correct the variant frequencies')
    parser.add_argument('--delim_csv', type=str, default=",",
                        help='Deliminator in csv summary file. Default comma.')


    return parser

16:30aec05d04d3

    parser.add_argument('--trim', type=int, default=10,
                        help='Integer threshold for assigning mutations at start and end of reads to lower tier. Default 10.')
    parser.add_argument('--chimera_correction', action="store_true",
                        help='Count chimeric variants and correct the variant frequencies')
    parser.add_argument('--delim_csv', type=str, default=",",
                        help='Delimiter in csv summary file. Default comma.')


    return parser