Mercurial > repos > mheinzl > variant_analyzer2

comparison read2mut.py @ 87:49b4a9ca7400 draft

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planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8-dirty
author mheinzl
date Sat, 22 Apr 2023 10:04:18 +0000
parents 97bd9c7a1b44
children 63e4e5d9a98f
comparison
equal deleted inserted replaced
86:97bd9c7a1b44 87:49b4a9ca7400
695 if (variant_type == "alt" and ((alt1f + alt2f + alt3f + alt4f) > 0.5)) or (variant_type == "ref" and ((ref1f + ref2f + ref3f + ref4f) > 0.5)): 695 if (variant_type == "alt" and ((alt1f + alt2f + alt3f + alt4f) > 0.5)) or (variant_type == "ref" and ((ref1f + ref2f + ref3f + ref4f) > 0.5)):
696 if row > 1000000: 696 if row > 1000000:
697 count_sheet += 1 697 count_sheet += 1
698 ws_new = workbook.add_worksheet("Results" + str(count_sheet)) 698 ws_new = workbook.add_worksheet("Results" + str(count_sheet))
699 current_result_sheet = ws_new 699 current_result_sheet = ws_new
700 row = 0
700 701
701 if variant_type == "alt": 702 if variant_type == "alt":
702 tier1ff, tier2ff, tier3ff, tier4ff = alt1f, alt2f, alt3f, alt4f 703 tier1ff, tier2ff, tier3ff, tier4ff = alt1f, alt2f, alt3f, alt4f
703 tier1ff_trim, tier2ff_trim, tier3ff_trim, tier4ff_trim = alt1f, alt2f, alt3f, alt4f 704 tier1ff_trim, tier2ff_trim, tier3ff_trim, tier4ff_trim = alt1f, alt2f, alt3f, alt4f
704 elif variant_type == "ref": 705 elif variant_type == "ref":