Mercurial > repos > mheinzl > variant_analyzer2
comparison read2mut.py @ 88:63e4e5d9a98f draft
planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8-dirty
| author | mheinzl |
|---|---|
| date | Sat, 22 Apr 2023 10:06:51 +0000 |
| parents | 49b4a9ca7400 |
| children | 1a5974404d4f |
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| 87:49b4a9ca7400 | 88:63e4e5d9a98f |
|---|---|
| 695 if (variant_type == "alt" and ((alt1f + alt2f + alt3f + alt4f) > 0.5)) or (variant_type == "ref" and ((ref1f + ref2f + ref3f + ref4f) > 0.5)): | 695 if (variant_type == "alt" and ((alt1f + alt2f + alt3f + alt4f) > 0.5)) or (variant_type == "ref" and ((ref1f + ref2f + ref3f + ref4f) > 0.5)): |
| 696 if row > 1000000: | 696 if row > 1000000: |
| 697 count_sheet += 1 | 697 count_sheet += 1 |
| 698 ws_new = workbook.add_worksheet("Results" + str(count_sheet)) | 698 ws_new = workbook.add_worksheet("Results" + str(count_sheet)) |
| 699 current_result_sheet = ws_new | 699 current_result_sheet = ws_new |
| 700 row = 0 | 700 row = 1 |
| 701 | 701 |
| 702 if variant_type == "alt": | 702 if variant_type == "alt": |
| 703 tier1ff, tier2ff, tier3ff, tier4ff = alt1f, alt2f, alt3f, alt4f | 703 tier1ff, tier2ff, tier3ff, tier4ff = alt1f, alt2f, alt3f, alt4f |
| 704 tier1ff_trim, tier2ff_trim, tier3ff_trim, tier4ff_trim = alt1f, alt2f, alt3f, alt4f | 704 tier1ff_trim, tier2ff_trim, tier3ff_trim, tier4ff_trim = alt1f, alt2f, alt3f, alt4f |
| 705 elif variant_type == "ref": | 705 elif variant_type == "ref": |