Mercurial > repos > mheinzl > variant_analyzer2
comparison read2mut.py @ 37:6ba980a3e91a draft
planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8
| author | mheinzl |
|---|---|
| date | Wed, 24 Feb 2021 12:55:52 +0000 |
| parents | ac400b6e44e1 |
| children | 797a58b9eccf |
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| 36:ac400b6e44e1 | 37:6ba980a3e91a |
|---|---|
| 780 'tier 1.1', 'tier 1.2', 'tier 2.1', 'tier 2.2', 'tier 2.3', 'tier 2.4', | 780 'tier 1.1', 'tier 1.2', 'tier 2.1', 'tier 2.2', 'tier 2.3', 'tier 2.4', |
| 781 'tier 3.1', 'tier 3.2', 'tier 4.1', 'tier 4.2', 'tier 5', 'tier 6', 'AF 1.1-1.2', 'AF 1.1-2.1', 'AF 1.1-2.2', | 781 'tier 3.1', 'tier 3.2', 'tier 4.1', 'tier 4.2', 'tier 5', 'tier 6', 'AF 1.1-1.2', 'AF 1.1-2.1', 'AF 1.1-2.2', |
| 782 'AF 1.1-2.3', 'AF 1.1-2.4', 'AF 1.1-3.1', 'AF 1.1-3.2', 'AF 1.1-4.1', 'AF 1.1-4.2', 'AF 1.1-5', 'AF 1.1-6') | 782 'AF 1.1-2.3', 'AF 1.1-2.4', 'AF 1.1-3.1', 'AF 1.1-3.2', 'AF 1.1-4.1', 'AF 1.1-4.2', 'AF 1.1-5', 'AF 1.1-6') |
| 783 | 783 |
| 784 ws2.write_row(0, 0, header_line2) | 784 ws2.write_row(0, 0, header_line2) |
| 785 ws2.conditional_format('J1:K1', {'type': 'formula', 'criteria': '=$J$1=tier 1.1', 'format': format1}) | 785 ws2.conditional_format('J1:K1', {'type': 'formula', 'criteria': '==', 'value': 'tier 1.1', 'format': format1}) |
| 786 | 786 |
| 787 row = 0 | 787 row = 0 |
| 788 | 788 |
| 789 for key1, value1 in sorted(tier_dict.items()): | 789 for key1, value1 in sorted(tier_dict.items()): |
| 790 if key1 in pure_tags_dict_short.keys(): | 790 if key1 in pure_tags_dict_short.keys(): |