Mercurial > repos > mheinzl > variant_analyzer2
comparison read2mut.py @ 60:9ce53bf0931c draft
planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8
| author | mheinzl |
|---|---|
| date | Mon, 15 Mar 2021 11:43:41 +0000 |
| parents | 0b3df6ea1434 |
| children | 3722268ffac5 |
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| 59:0b3df6ea1434 | 60:9ce53bf0931c |
|---|---|
| 1105 for sample in change_tier_after_print: | 1105 for sample in change_tier_after_print: |
| 1106 row_number = sample[0] | 1106 row_number = sample[0] |
| 1107 line1 = sample[1] | 1107 line1 = sample[1] |
| 1108 line2 = sample[2] | 1108 line2 = sample[2] |
| 1109 | 1109 |
| 1110 if correct_tier: | 1110 if correct_tier and list(line1)[1] == "4": |
| 1111 line1 = list(line1) | 1111 line1 = list(line1) |
| 1112 line1[1] = "2.5" | 1112 line1[1] = "2.5" |
| 1113 line1 = tuple(line1) | 1113 line1 = tuple(line1) |
| 1114 counter_tier25 += 1 | 1114 counter_tier25 += 1 |
| 1115 counter_tier4 -= 1 | 1115 counter_tier4 -= 1 |