Mercurial > repos > mheinzl > variant_analyzer2

comparison read2mut.py @ 18:d910b6dfd826 draft

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planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8
author mheinzl
date Mon, 22 Feb 2021 14:42:31 +0000
parents f06067bedfc5
children 858ca8b7ad43
comparison
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17:f06067bedfc5 18:d910b6dfd826
85 outputFile_csv = args.outputFile_csv 85 outputFile_csv = args.outputFile_csv
86 thresh = args.thresh 86 thresh = args.thresh
87 phred_score = args.phred 87 phred_score = args.phred
88 trim = args.trim 88 trim = args.trim
89 chimera_correction = args.chimera_correction 89 chimera_correction = args.chimera_correction
90 delim_csv = args.delim_csv
91 90
92 if os.path.isfile(file1) is False: 91 if os.path.isfile(file1) is False:
93 sys.exit("Error: Could not find '{}'".format(file1)) 92 sys.exit("Error: Could not find '{}'".format(file1))
94 if os.path.isfile(file2) is False: 93 if os.path.isfile(file2) is False:
95 sys.exit("Error: Could not find '{}'".format(file2)) 94 sys.exit("Error: Could not find '{}'".format(file2))