Mercurial > repos > mheinzl > variant_analyzer2

diff read2mut.xml @ 72:3691922baa08 draft

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planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8
author mheinzl
date Fri, 19 Mar 2021 14:05:39 +0000
parents f0fc93b7945c
children 3e3136368e0d
line wrap: on
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--- a/read2mut.xml	Fri Mar 19 13:54:14 2021 +0000
+++ b/read2mut.xml	Fri Mar 19 14:05:39 2021 +0000
@@ -1,15 +1,12 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<tool id="read2mut" name="Call specific mutations in reads:" version="2.1.2" profile="17.01">
+<tool id="read2mut" name="Call specific mutations in reads:" version="2.1.2" profile="19.01">
     <description>Looks for reads with mutation at known positions and calculates frequencies and stats.</description>
     <macros>
         <import>va_macros.xml</import>
     </macros>
-    <requirements>
-        <requirement type="package" version="2.7">python</requirement>
-        <requirement type="package" version="1.4.0">matplotlib</requirement>
-        <requirement type="package" version="0.15">pysam</requirement>
+    <expand macro="requirements">
         <requirement type="package" version="1.1.0">xlsxwriter</requirement>
-        <requirement type="package" version="0.11.6">cyvcf2</requirement>
+    </expand>
     </requirements>
     <command><![CDATA[
         ln -s '$file2' bam_input.bam &&