Mercurial > repos > mheinzl > variant_analyzer2

diff read2mut.py @ 76:56f271641828 draft

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planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8
author mheinzl
date Fri, 26 Mar 2021 07:49:15 +0000
parents 6ccff403db8a
children 1797e461d674
line wrap: on
line diff
--- a/read2mut.py	Tue Mar 23 15:18:17 2021 +0000
+++ b/read2mut.py	Fri Mar 26 07:49:15 2021 +0000
@@ -256,7 +256,7 @@
     else:
         pure_tags_dict_short = pure_tags_dict
 
-    csv_data = open(outputFile_csv, "wb")
+    csv_data = open(outputFile_csv, "w")
     csv_writer = csv.writer(csv_data, delimiter=",")
 
     # output summary with threshold
@@ -551,7 +551,7 @@
                     used_keys.append(key2[:-5])
                     counts_mut += 1
                     if (alt1f + alt2f + alt3f + alt4f) > 0.5:
-                    	total1new_trim, total2new_trim, total3new_trim, total4new_trim = total1new, total2new, total3new, total4new
+                        total1new_trim, total2new_trim, total3new_trim, total4new_trim = total1new, total2new, total3new, total4new
                         if total1new == 0:
                             ref1f = alt1f = None
                             alt1ff = -1