diff mut2read.xml @ 11:84a1a3f70407 draft

planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8

--- a/mut2read.xml	Thu Feb 04 09:01:43 2021 +0000
+++ b/mut2read.xml	Mon Feb 15 21:53:24 2021 +0000
@@ -1,15 +1,10 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<tool id="mut2read" name="DCS mutations to tags/reads:" version="2.0.0" profile="19.01">
+<tool id="mut2read" name="DCS mutations to tags/reads:" version="2.0.1" profile="19.01">
     <description>Extracts all tags that carry a mutation in the duplex consensus sequence (DCS)</description>
     <macros>
         <import>va_macros.xml</import>
     </macros>
-	<requirements>
-        <requirement type="package" version="2.7">python</requirement>
-        <requirement type="package" version="1.4.0">matplotlib</requirement>
-        <requirement type="package" version="0.15">pysam</requirement>
-        <requirement type="package" version="0.11.6">cyvcf2</requirement>
-    </requirements>
+    <expand macro="requirements"/>
     <command><![CDATA[
         ln -s '$file2' bam_input.bam &&
         ln -s '${file2.metadata.bam_index}' bam_input.bam.bai &&
@@ -32,10 +27,10 @@
     </outputs>
     <tests>
         <test>
-            <param name="file1" value="FreeBayes_test.vcf" lines_diff="2"/>
+            <param name="file1" value="FreeBayes_test.vcf"/>
             <param name="file2" value="DCS_test.bam"/>
             <param name="file3" value="Aligned_Families_test.tabular"/>
-            <output name="output_fastq" file="Interesting_Reads_test.fastq" lines_diff="136"/>
+            <output name="output_fastq" file="Interesting_Reads_test.fastq"/>
             <output name="output_json" file="tag_count_dict_test.json" lines_diff="2"/>
         </test>
     </tests>