Mercurial > repos > mheinzl > variant_analyzer2

diff mut2sscs.xml @ 11:84a1a3f70407 draft

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planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8
author mheinzl
date Mon, 15 Feb 2021 21:53:24 +0000
parents 11a2a34f8a2b
children d21960b45a6b
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--- a/mut2sscs.xml	Thu Feb 04 09:01:43 2021 +0000
+++ b/mut2sscs.xml	Mon Feb 15 21:53:24 2021 +0000
@@ -1,15 +1,10 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<tool id="mut2sscs" name="DCS mutations to SSCS stats:" version="2.0.0" profile="19.01">
+<tool id="mut2sscs" name="DCS mutations to SSCS stats:" version="2.0.1" profile="19.01">
     <description>Extracts all tags from the single stranded consensus sequence (SSCS) bam file that carry a mutation at the same position a mutation is called in the duplex consensus sequence (DCS) and calculates their frequencies</description>
     <macros>
         <import>va_macros.xml</import>
     </macros>
-    <requirements>
-        <requirement type="package" version="2.7">python</requirement>
-        <requirement type="package" version="1.4.0">matplotlib</requirement>
-        <requirement type="package" version="0.15">pysam</requirement>
-        <requirement type="package" version="0.11.6">cyvcf2</requirement>
-    </requirements>
+    <expand macro="requirements"/>
     <command><![CDATA[
         ln -s '$file2' bam_input.bam &&
         ln -s '${file2.metadata.bam_index}' bam_input.bam.bai &&