diff read2mut.py @ 42:da224c392a54 draft

planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8

--- a/read2mut.py	Wed Feb 24 13:14:28 2021 +0000
+++ b/read2mut.py	Wed Feb 24 14:20:17 2021 +0000
@@ -60,9 +60,9 @@
     parser.add_argument('--phred', type=int, default=20,
                         help='Integer threshold for Phred score. Only reads higher than this threshold are considered. Default 20.')
     parser.add_argument('--trim5', type=int, default=10,
-                        help='Integer threshold for assigning mutations at start of reads to lower tier. Default 10.')
+                        help='Integer threshold for assigning mutations at the beginning of the reads to lower tier. Default 10.')
     parser.add_argument('--trim3', type=int, default=10,
-                        help='Integer threshold for assigning mutations at end of reads to lower tier. Default 10.')
+                        help='Integer threshold for assigning mutations at the end of the reads to lower tier. Default 10.')
     parser.add_argument('--chimera_correction', action="store_true",
                         help='Count chimeric variants and correct the variant frequencies')
     return parser