# HG changeset patch
# User mheinzl
# Date 1615558923 0
# Node ID 371c09d4050beac3c4cc409ea1fa0ebf283f4025
# Parent  8fbe6aba07e5b39a773091bb863a16d37ffa085e
planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8

diff -r 8fbe6aba07e5 -r 371c09d4050b read2mut.py
--- a/read2mut.py	Fri Mar 12 14:18:45 2021 +0000
+++ b/read2mut.py	Fri Mar 12 14:22:03 2021 +0000
@@ -1225,7 +1225,7 @@
                          ("Tier 2.2", "both ab and ba SSCS present (>75% of the sites with alt. base) and mate pair validation (min. FS=1)"),
                          ("Tier 2.3", "both ab and ba SSCS present (>75% of the sites with alt. base) and minimal FS=1 for both SSCS in one mate and minimal FS>=3 for at least one of the SSCS in the other mate"),
                          ("Tier 2.4", "both ab and ba SSCS present (>75% of the sites with alt. base) and minimal FS=1 for both SSCS in at least one mate"),
-                         ("Tier 2.5", "variants at the start or end of the read and recurring mutation on this position in tier 1.1-2.4")
+                         ("Tier 2.5", "variants at the start or end of the read and recurring mutation on this position in tier 1.1-2.4"),
                          ("Tier 3.1", "both ab and ba SSCS present (>50% of the sites with alt. base) and recurring mutation on this position"),
                          ("Tier 3.2", "both ab and ba SSCS present (>50% of the sites with alt. base) and minimal FS>=1 for both SSCS in at least one mate"),
                          ("Tier 4", "variants at the start or end of the reads"),