# HG changeset patch
# User mheinzl
# Date 1616744955 0
# Node ID 56f271641828e7a596a0bff6a34dec9b2e0cc4c8
# Parent  6ccff403db8a8cdd97016e73a91a0027ddec4709
planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8

diff -r 6ccff403db8a -r 56f271641828 read2mut.py
--- a/read2mut.py	Tue Mar 23 15:18:17 2021 +0000
+++ b/read2mut.py	Fri Mar 26 07:49:15 2021 +0000
@@ -256,7 +256,7 @@
     else:
         pure_tags_dict_short = pure_tags_dict
 
-    csv_data = open(outputFile_csv, "wb")
+    csv_data = open(outputFile_csv, "w")
     csv_writer = csv.writer(csv_data, delimiter=",")
 
     # output summary with threshold
@@ -551,7 +551,7 @@
                     used_keys.append(key2[:-5])
                     counts_mut += 1
                     if (alt1f + alt2f + alt3f + alt4f) > 0.5:
-                    	total1new_trim, total2new_trim, total3new_trim, total4new_trim = total1new, total2new, total3new, total4new
+                        total1new_trim, total2new_trim, total3new_trim, total4new_trim = total1new, total2new, total3new, total4new
                         if total1new == 0:
                             ref1f = alt1f = None
                             alt1ff = -1
diff -r 6ccff403db8a -r 56f271641828 read2mut.xml
--- a/read2mut.xml	Tue Mar 23 15:18:17 2021 +0000
+++ b/read2mut.xml	Fri Mar 26 07:49:15 2021 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<tool id="read2mut" name="Call specific mutations in reads:" version="2.1.3" profile="19.01">
+<tool id="read2mut" name="Call specific mutations in reads:" version="2.1.4" profile="19.01">
     <description>Looks for reads with mutation at known positions and calculates frequencies and stats.</description>
     <macros>
         <import>va_macros.xml</import>