# HG changeset patch
# User mheinzl
# Date 1612429303 0
# Node ID e18c5293aac72401d1d62a0d7af58d9f73143d09
# Parent  5800e3acb06d3d15e38cb0b53b1acae44a0843ee
planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8

diff -r 5800e3acb06d -r e18c5293aac7 mut2read.py
--- a/mut2read.py	Thu Feb 04 08:57:57 2021 +0000
+++ b/mut2read.py	Thu Feb 04 09:01:43 2021 +0000
@@ -74,10 +74,10 @@
         stop_pos = variant.start
         #chrom_stop_pos = str(chrom) + "#" + str(stop_pos)
         ref = variant.REF
-        if len(variant.ALT) > 0:
+        if len(variant.ALT) == 0:
+            continue
+        else:
             alt = variant.ALT[0]
-        else:
-            alt = variant.ALT
         print(alt)
         chrom_stop_pos = str(chrom) + "#" + str(stop_pos) + "#" + ref + "#" + alt
 
diff -r 5800e3acb06d -r e18c5293aac7 mut2sscs.py
--- a/mut2sscs.py	Thu Feb 04 08:57:57 2021 +0000
+++ b/mut2sscs.py	Thu Feb 04 09:01:43 2021 +0000
@@ -68,10 +68,10 @@
         stop_pos = variant.start
         #chrom_stop_pos = str(chrom) + "#" + str(stop_pos)
         ref = variant.REF
-        if len(variant.ALT) > 0:
+        if len(variant.ALT) == 0:
+            continue
+        else:
             alt = variant.ALT[0]
-        else:
-            alt = variant.ALT
         chrom_stop_pos = str(chrom) + "#" + str(stop_pos) + "#" + ref + "#" + alt
 
         if len(ref) == len(alt):
diff -r 5800e3acb06d -r e18c5293aac7 read2mut.py
--- a/read2mut.py	Thu Feb 04 08:57:57 2021 +0000
+++ b/read2mut.py	Thu Feb 04 09:01:43 2021 +0000
@@ -132,10 +132,10 @@
         stop_pos = variant.start
         #chrom_stop_pos = str(chrom) + "#" + str(stop_pos)
         ref = variant.REF
-        if len(variant.ALT) > 0:
+        if len(variant.ALT) == 0:
+            continue
+        else:
             alt = variant.ALT[0]
-        else:
-            alt = variant.ALT
         chrom_stop_pos = str(chrom) + "#" + str(stop_pos) + "#" + ref + "#" + alt
 
         if len(ref) == len(alt):