Mercurial > repos > mheinzl > variant_analyzer2
changeset 20:ac07ff15dcfd draft
planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8
| author | mheinzl |
|---|---|
| date | Mon, 22 Feb 2021 15:05:26 +0000 |
| parents | 858ca8b7ad43 |
| children | b67d4c7da780 |
| files | read2mut.py |
| diffstat | 1 files changed, 4 insertions(+), 2 deletions(-) [+] |
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--- a/read2mut.py Mon Feb 22 15:02:21 2021 +0000 +++ b/read2mut.py Mon Feb 22 15:05:26 2021 +0000 @@ -101,8 +101,10 @@ sys.exit("Error: thresh is '{}', but only non-negative integers allowed".format(thresh)) if phred_score < 0: sys.exit("Error: phred is '{}', but only non-negative integers allowed".format(phred_score)) - if trim < 0: - sys.exit("Error: trim is '{}', but only non-negative integers allowed".format(thresh)) + if trim5 < 0: + sys.exit("Error: trim5 is '{}', but only non-negative integers allowed".format(trim5)) + if trim3 < 0: + sys.exit("Error: trim3 is '{}', but only non-negative integers allowed".format(trim3)) # load dicts with open(json_file, "r") as f: