ncbo_services: NCBO_services/README annotate

annotate NCBO_services/README @ 17:fc4c8a9b3152

branch merge

author	Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
date	Wed, 18 Jan 2012 11:06:11 +0100
parents	d3d6bdbcf3ea
children	0078fe4c89e3

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e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	4 =============
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	5 NCBO Services
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	6 =============
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	7
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e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	9
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	10 INSTALLATION
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	11 ============
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	12
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	13 1.- Stop Galaxy.
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	14
16 d3d6bdbcf3ea get_ontology jars included for simpler installation and README updated with installation information for new tools Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 0 diff changeset	15 2.- Copy the .jar files to /galaxy-dist/tool-data/shared/jars/
0 e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	16
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	17 3.- Create directory /galaxy-dist/tools/NCBO_services/
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	18
16 d3d6bdbcf3ea get_ontology jars included for simpler installation and README updated with installation information for new tools Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 0 diff changeset	19 4.- Copy the .xml files to /galaxy-dist/tools/NCBO_services/
0 e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	20
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	21 5.- Add the following lines to /galaxy-dist/tool_conf.xml:
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	22
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	23 <section name="NCBO services" id="NCBO_services">
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	24 <tool file="NCBO_services/get_ontology.xml"/>
16 d3d6bdbcf3ea get_ontology jars included for simpler installation and README updated with installation information for new tools Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 0 diff changeset	25 <tool file="NCBO_services/ncbo_annotator.xml"/>
d3d6bdbcf3ea get_ontology jars included for simpler installation and README updated with installation information for new tools Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 0 diff changeset	26 <tool file="NCBO_services/ncbo_annotator.xml"/>
d3d6bdbcf3ea get_ontology jars included for simpler installation and README updated with installation information for new tools Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 0 diff changeset	27 <tool file="NCBO_services/ncbo_recommender.xml"/>
0 e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	28 </section>
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	29
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	30 6.- Start Galaxy.
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	31
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	32
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	33
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	34 USAGE
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	35 =====
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	36
16 d3d6bdbcf3ea get_ontology jars included for simpler installation and README updated with installation information for new tools Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 0 diff changeset	37 Each tool has a different functionality, but all of them need a
d3d6bdbcf3ea get_ontology jars included for simpler installation and README updated with installation information for new tools Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 0 diff changeset	38 bioportal API key. The API key can be obtained by creating an account at
d3d6bdbcf3ea get_ontology jars included for simpler installation and README updated with installation information for new tools Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 0 diff changeset	39 bioportal (http://bioportal.bioontology.org/).
0 e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	40
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	41
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	42
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	43 CONTACT
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	44 =======
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	45
16 d3d6bdbcf3ea get_ontology jars included for simpler installation and README updated with installation information for new tools Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 0 diff changeset	46 Please send any request or comment to mikel.egana.aranguren@gmail.com or
d3d6bdbcf3ea get_ontology jars included for simpler installation and README updated with installation information for new tools Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 0 diff changeset	47 jose.minya@gmail.com.
0 e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	48
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e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	56
16 d3d6bdbcf3ea get_ontology jars included for simpler installation and README updated with installation information for new tools Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 0 diff changeset	57
d3d6bdbcf3ea get_ontology jars included for simpler installation and README updated with installation information for new tools Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 0 diff changeset	58
d3d6bdbcf3ea get_ontology jars included for simpler installation and README updated with installation information for new tools Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 0 diff changeset	59
d3d6bdbcf3ea get_ontology jars included for simpler installation and README updated with installation information for new tools Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 0 diff changeset	60

Mercurial > repos > mikel-egana-aranguren > ncbo_services

annotate NCBO_services/README @ 17:fc4c8a9b3152