Mercurial > repos > mikel-egana-aranguren > ncbo_services
comparison NCBO_services/get_ontology.xml @ 21:03bacb9f1562
bug fixed in get ontology
| author | Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> |
|---|---|
| date | Tue, 28 Feb 2012 21:17:54 +0100 |
| parents | 1910c878378c |
| children |
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| 20:1910c878378c | 21:03bacb9f1562 |
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| 1 <tool id="get_ontology" name="Get ontology by id" version="1.0.3"> | 1 <tool id="get_ontology" name="Get ontology by id" version="1.0.3"> |
| 2 <description>Retrieves an ontology from bioportal using its id</description> | 2 <description>Retrieves an ontology from bioportal using its id</description> |
| 3 <!-- <command>java -jar ${__tool_data_path__}/shared/jars/ncbo_galaxy.jar $api_key $ontology_id > $output </command> --> | 3 <!-- <command>java -jar ${__tool_data_path__}/shared/jars/ncbo_galaxy.jar $api_key $ontology_id > $output </command> --> |
| 4 <command> | 4 <command> |
| 5 #if $id_opts.id_opts_menu=="id_by_hand" #java -jar ${__tool_data_path__}/shared/jars/ncbo_galaxy.jar $api_key $id_opts.ontology_id > $output | 5 #if $id_opts.id_opts_menu=="id_by_hand" #java -jar ${__tool_data_path__}/shared/jars/get_ontology.jar $api_key $id_opts.ontology_id > $output |
| 6 #else #java -jar ${__tool_data_path__}/shared/jars/ncbo_galaxy.jar $api_key $id_opts.ontology_id > $output | 6 #else #java -jar ${__tool_data_path__}/shared/jars/get_ontology.jar $api_key $id_opts.ontology_id > $output |
| 7 #end if | 7 #end if |
| 8 </command> | 8 </command> |
| 9 | 9 |
| 10 <inputs> | 10 <inputs> |
| 11 <param name="api_key" type="text" size="100" label="BioPortal API key" /> | 11 <param name="api_key" type="text" size="100" label="BioPortal API key" /> |