comparison get_ontology_view.xml @ 27:e2b16720ef25 draft

Directories re-arranged for easier installation via mercurial

27:e2b16720ef25

<tool id="get_ontology_view" name="Get a concrete view of an ontology" version="1.0.1">
	<description>Retrieves a view of an ontology using the view id</description>
	<command>java -jar ${__tool_data_path__}/shared/jars/get_ontology_view.jar $api_key $ontologyviewid > $output </command>  

	<inputs>
		<param name="api_key" type="text" size="100" label="BioPortal API key" />
		<param name="ontologyviewid" type="text" size="100" label="Ontology view ID" />
	</inputs>
	<outputs>
		<data format="text" name="output" />
	</outputs>
	<tests>
		<test>
			<param name="api_key"/>
		</test>
	</tests>
	<help>

**What it does**

It retrieves a view from an ontology contained in BioPortal.

**Parameters**

* Bioportal API key: to obtain an API key, open an account in http://bioportal.bioontology.org.
* Ontology view ID: it can be obtained from BioPortal, in the Ontology page, on the views section, by looking at the view URL. For example, it is 41014 for the generic Gene Ontology slim.

**Contact**

Please send any request or comment to [e-mail].
    
**More information**

http://bioportal.bioontology.org
  
http://www.bioontology.org/wiki/index.php/BioPortal_REST_services

	</help>

</tool>