diff NCBO_services/README @ 0:e25b2c00fffd

first version

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+
+
+
+			=============
+			NCBO Services
+			=============
+
+
+
+INSTALLATION
+============
+
+1.- Stop Galaxy.
+
+2.- Copy the .jar files and _lib/ directories to
+/galaxy-dist/tool-data/shared/jars/
+
+3.- Create directory /galaxy-dist/tools/NCBO_services/
+
+4.- Copy get_ontology.xml to /galaxy-dist/tools/NCBO_services/
+
+5.- Add the following lines to /galaxy-dist/tool_conf.xml:
+
+  <section name="NCBO services" id="NCBO_services">
+    <tool file="NCBO_services/get_ontology.xml"/>
+  </section>
+
+6.- Start Galaxy.
+
+
+
+USAGE
+=====
+
+A bioportal API key and an ontology id must be provided. The API key can be
+obtained by creating an account at bioportal
+(http://bioportal.bioontology.org/). The id can be obtained in the ontology page
+(e.g. 1522 for BioPAX, see http://bioportal.bioontology.org/ontologies/1522)
+
+
+
+CONTACT
+=======
+
+Please send any request or comment to [e-mail].
+
+
+
+ACKNOWLEDGEMENTS
+================
+
+This work is funded by the Marie Curie Cofund program of the EU, FP7.
+
+
+
+COPYRIGHT AND LICENSE
+=====================
+
+Copyright (c) 2011 Mikel Egaña Aranguren. 
+
+NCBO Services is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
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