diff README @ 27:e2b16720ef25 draft

Directories re-arranged for easier installation via mercurial

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README	Mon Oct 08 14:25:04 2012 +0200
@@ -0,0 +1,82 @@
+
+
+
+			=============
+			NCBO Services
+			=============
+
+
+
+INSTALLATION
+============
+
+1.- Stop Galaxy.
+
+2.- Copy the .jar files to /galaxy-dist/tool-data/shared/jars/
+
+3.- Create directory /galaxy-dist/tools/NCBO_services/
+
+4.- Copy the .xml files to /galaxy-dist/tools/NCBO_services/
+
+5.- Add the following lines to /galaxy-dist/tool_conf.xml:
+
+  <section name="NCBO services" id="NCBO_services">
+    <tool file="NCBO_services/get_ontology.xml"/>
+    <tool file="NCBO_services/extract.xml"/>
+    <tool file="NCBO_services/get_ontology_view.xml"/>
+    <tool file="NCBO_services/ncbo_annotator.xml"/>
+    <tool file="NCBO_services/ncbo_recommender.xml"/>
+    <tool file="NCBO_services/ncbo_search.xml"/>
+    <tool file="NCBO_services/ncbo_resourceIndex.xml"/>
+  </section>
+
+6.- Start Galaxy.
+
+
+
+USAGE
+=====
+
+Each tool has a different functionality, but all of them need a
+bioportal API key. The API key can be obtained by creating an account at
+bioportal (http://bioportal.bioontology.org/). 
+
+
+
+CONTACT
+=======
+
+Please send any request or comment to [e-mail] or
[e-mail].
+
+
+
+ACKNOWLEDGEMENTS
+================
+
+The work on get_ontology, extract and get_ontology_view is funded by the
+Marie Curie Cofund program of the EU, FP7.
+
+
+
+COPYRIGHT AND LICENSE
+=====================
+
+get_ontology, extract and get_ontology_view are copyright of Mikel
+Egaña Aranguren (2012), and they are distributed under a GPL 3 license
+(http://www.gnu.org/licenses/)
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+