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get_ontology menu improved (Automatically generated), source added, readme improved
author Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
date Wed, 25 Jan 2012 19:49:20 +0100
parents 4cd75b0d77af
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			=============
			NCBO Services
			=============



INSTALLATION
============

1.- Stop Galaxy.

2.- Copy the .jar files to /galaxy-dist/tool-data/shared/jars/

3.- Create directory /galaxy-dist/tools/NCBO_services/

4.- Copy the .xml files to /galaxy-dist/tools/NCBO_services/

5.- Add the following lines to /galaxy-dist/tool_conf.xml:

  <section name="NCBO services" id="NCBO_services">
    <tool file="NCBO_services/get_ontology.xml"/>
    <tool file="NCBO_services/extract.xml"/>
    <tool file="NCBO_services/get_ontology_view.xml"/>
    <tool file="NCBO_services/ncbo_annotator.xml"/>
    <tool file="NCBO_services/ncbo_annotator.xml"/>
    <tool file="NCBO_services/ncbo_recommender.xml"/>
  </section>

6.- Start Galaxy.



USAGE
=====

Each tool has a different functionality, but all of them need a
bioportal API key. The API key can be obtained by creating an account at
bioportal (http://bioportal.bioontology.org/). 



CONTACT
=======

Please send any request or comment to mikel.egana.aranguren@gmail.com or
jose.minya@gmail.com.



ACKNOWLEDGEMENTS
================

The work on get_ontology, extract and get_ontology_view is funded by the
Marie Curie Cofund program of the EU, FP7.



COPYRIGHT AND LICENSE
=====================

get_ontology, extract and get_ontology_view are copyright of Mikel
Egaña Aranguren (2012), and they are distributed under a GPL 3 license
(http://www.gnu.org/licenses/)