Mercurial > repos > mikel-egana-aranguren > ncbo_services

<tool id="get_ontology" name="Get ontology by id" version="1.0.1">
	<description>Retrieves an ontology from bioportal using its id</description>
	<command>java -jar ${__tool_data_path__}/shared/jars/ncbo_galaxy.jar $api_key $ontology_id > $output </command>
	<inputs>
		<param name="api_key" type="text" size="100" label="BioPortal API key" />
		<param name="ontology_id" type="text" size="100" label="Ontology ID from bioportal" />
	</inputs>
	<outputs>
		<data format="text" name="output" />
	</outputs>
	<tests>
		<test>
			<param name="api_key" value="74c12fc6-9423-455a-a619-b94f47d1951b"/>
			<param name="ontology_id" value="1522"/>
		</test>
	</tests>
	<help>

**Usage**

  Enter bioportal API key and ontology id (e.g. 1522 for BioPAX), and the ontology will be retrieved.

**Contact**

  Please send any request or comment to mikel.egana.aranguren@gmail.com.

**More information**

  http://bioportal.bioontology.org

	</help>

</tool>
author	Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
date	Sat, 31 Dec 2011 16:20:38 +0100
parents	e25b2c00fffd
children	86a5e3f4f32f