# HG changeset patch # User Mikel Egaña Aranguren # Date 1326360470 -3600 # Node ID 097aa7000159b1cd0c0401d006b9df850acef156 # Parent 86a5e3f4f32fb52033d4ede729c9dd6e05fa1434 Interface improved diff -r 86a5e3f4f32f -r 097aa7000159 NCBO_services/get_ontology.xml --- a/NCBO_services/get_ontology.xml Sat Dec 31 17:30:24 2011 +0100 +++ b/NCBO_services/get_ontology.xml Thu Jan 12 10:27:50 2012 +0100 @@ -1,9 +1,279 @@ - + Retrieves an ontology from bioportal using its id - java -jar ${__tool_data_path__}/shared/jars/ncbo_galaxy.jar $api_key $ontology_id > $output + + + #if $id_opts.id_opts_menu=="id_by_hand" #java -jar ${__tool_data_path__}/shared/jars/ncbo_galaxy.jar $api_key $id_opts.ontology_id > $output + #else #java -jar ${__tool_data_path__}/shared/jars/ncbo_galaxy.jar $api_key $id_opts.ontology_id > $output + #end if + + - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -18,7 +288,7 @@ **Usage** - Enter bioportal API key and ontology id (e.g. 1522 for BioPAX), and the ontology will be retrieved. + Enter bioportal API key and ontology id (e.g. 1522 for BioPAX), or select from list, and the ontology will be retrieved. **Contact**