# HG changeset patch # User jose-minyarro # Date 1326876484 18000 # Node ID ff87703d9c85ac44c5541fcc8bcbef3b8ade24a3 # Parent 3c3db7a8c13af1a5e74aee7c8ad663f64720be82 Uploaded diff -r 3c3db7a8c13a -r ff87703d9c85 NCBO_services/ncbo_annotator.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/NCBO_services/ncbo_annotator.xml Wed Jan 18 03:48:04 2012 -0500 @@ -0,0 +1,704 @@ + + Annotates biological texts with the terms of the bio-ontologies from BioPortal + java -jar ${__tool_data_path__}/shared/jars/ncbo_annotator_galaxy.jar $longestOnly $wholeWordOnly $filterNumber $stopWords $withDefaultStopWords $isTopWordsCaseSensitive $mintermSize $scored $withSynonyms $ontologiesToExpand $ontologiesToKeepInResult $semanticTypes $levelMax $mappingTypes $textToAnnotate $format $apikey > $output + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +**Usage** + Enter bioportal API key, a text to annotate and specify the parameters, and the annotations will be retrieved. + +**Contact** + + Please send any request or comment to jose.minyarro@um.es + +**More information** + + http://bioportal.bioontology.org + + + + \ No newline at end of file