Mercurial > repos > mikel-egana-aranguren > oppl
comparison OPPL/README @ 3:5255f1333cc4
Version 1.0.1
Added output choice: OBO or OWL(RDF/XML)
| author | Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> |
|---|---|
| date | Wed, 07 Sep 2011 10:46:29 +0200 |
| parents | 46b9d13a44fc |
| children | 4f60202c58d9 |
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| 2:0a374d0b7759 | 3:5255f1333cc4 |
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| 28 6.- Start galaxy. | 28 6.- Start galaxy. |
| 29 | 29 |
| 30 Note that if you want you can use any java parameter by editing oppl.xml | 30 Note that if you want you can use any java parameter by editing oppl.xml |
| 31 , eg: <command>java -Xmx7000M -Xms250M -DentityExpansionLimit=1000000000 | 31 , eg: <command>java -Xmx7000M -Xms250M -DentityExpansionLimit=1000000000 |
| 32 -jar ${__tool_data_path__}/shared/jars/oppl_galaxy_tool.jar $input $OPPL | 32 -jar ${__tool_data_path__}/shared/jars/oppl_galaxy_tool.jar $input $OPPL |
| 33 > $output </command> | 33 $format > $output </command> |
| 34 | 34 |
| 35 | 35 |
| 36 | 36 |
| 37 USAGE | 37 USAGE |
| 38 ===== | 38 ===== |