Mercurial > repos > mikel-egana-aranguren > oppl
diff README @ 20:46257c870179 draft
New installation procedure added
| author | Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> |
|---|---|
| date | Mon, 08 Oct 2012 12:55:08 +0200 |
| parents | cc270db37d33 |
| children | ffde1fafa066 |
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--- a/README Sat Oct 06 21:50:39 2012 +0200 +++ b/README Mon Oct 08 12:55:08 2012 +0200 @@ -1,8 +1,55 @@ +INSTALLATION VIA MERCURIAL (RECOMMENDED) +======================================== + +1.- Stop Galaxy. + +2.- Move to galaxy-dist/tools/ + +3.- Clone the OPPL-Galaxy repository with mercurial: + +hg clone http://mikel-egana-aranguren@toolshed.g2.bx.psu.edu/repos/mikel-egana-aranguren/oppl + +4.- Move to galaxy-dist/tools/oppl/ and run install.sh: + +chmod +x install.sh +./install.sh + +5.- Add the following lines to /galaxy-dist/tool_conf.xml: + + <section name="Ontology Pre Processor Language" id="oppl"> + <tool file="oppl/oppl.xml"/> + <tool file="oppl/inference.xml"/> + <tool file="oppl/query.xml"/> + <tool file="oppl/oppl_query.xml"/> + <tool file="oppl/merge.xml"/> + </section> + +6.- Start Galaxy. + +For updates: + +1.- Stop Galaxy. + +2.- Move to galaxy-dist/tools/oppl/ + +3.- Update local files: + +hg update + +4.- Run install.sh: + +./install.sh + +5.- Only edit /galaxy-dist/tool_conf.xml in case a tool (an XML file) has been added/removed. + +6.- Start Galaxy. -MANUAL INSTALLATION -============ +MANUAL INSTALLATION (DIRECT DOWNLOAD) +===================================== + +Download and uncompress anywhere you like, and then: 1.- Stop Galaxy. @@ -22,27 +69,24 @@ FaCT++-linux-v1.5.2/ FaCT++-OSX-v1.5.2/ -3.- Create directory /galaxy-dist/tools/OPPL/ +3.- Create directory /galaxy-dist/tools/oppl/ 4.- Copy oppl.xml, inference.xml, query.xml, oppl_query.xml and -merge.xml to /galaxy-dist/tools/OPPL/ +merge.xml to /galaxy-dist/tools/oppl/ 5.- Add the following lines to /galaxy-dist/tool_conf.xml: <section name="Ontology Pre Processor Language" id="oppl"> - <tool file="OPPL/oppl.xml"/> - <tool file="OPPL/inference.xml"/> - <tool file="OPPL/query.xml"/> - <tool file="OPPL/oppl_query.xml"/> - <tool file="OPPL/merge.xml"/> + <tool file="oppl/oppl.xml"/> + <tool file="oppl/inference.xml"/> + <tool file="oppl/query.xml"/> + <tool file="oppl/oppl_query.xml"/> + <tool file="oppl/merge.xml"/> </section> 6.- Start Galaxy. -INSTALLATION VIA MERCURIAL AND SHELL SCRIPT - - FORESEEN FEATURES =================