diff OPPL/README @ 13:7e6604a5ee55

New query tool added

--- a/OPPL/README	Thu Mar 22 14:37:46 2012 +0100
+++ b/OPPL/README	Thu Mar 29 14:49:22 2012 +0200
@@ -10,21 +10,25 @@
 /galaxy-dist/tool-data/shared/jars/:
 
 oppl_galaxy_tool.jar
-oppl_galax_lib/
+inference.jar
+query.jar
+oppl_galaxy_lib/
+inference_lib/
+query_lib/
 FaCT++-linux-v1.5.2/ 
 FaCT++-OSX-v1.5.2/
-inference.jar
-inference_lib/ 
-
+ 
 3.- Create directory /galaxy-dist/tools/OPPL/
 
-4.- Copy oppl.xml and inference.xml to /galaxy-dist/tools/OPPL/
+4.- Copy oppl.xml, inference.xml and query.xml to
+/galaxy-dist/tools/OPPL/
 
 5.- Add the following lines to /galaxy-dist/tool_conf.xml:
 
   <section name="Ontology Pre Processor Language" id="oppl">
     <tool file="OPPL/oppl.xml"/>
     <tool file="OPPL/inference.xml"/>
+    <tool file="OPPL/query.xml"/>
   </section>
 
 6.- Start Galaxy.
@@ -34,24 +38,28 @@
 FORESEEN FEATURES
 =================
 
-OPPL:
+General (OPPL, Inference, Query):
 
 - Support for processing ontologies that import other ontologies loaded
 in galaxy.
 
-- Rendering definition (URI fragment, label, etc).
+- Entities rendering definition (URI fragment, rdfs:label, QName, etc).
+
+- OWLLink and Racer support.
+
+
+OPPL:
 
 - Standalone OPPL assertions parsing (e.g. ADD phagocyte subClassOf
 cell).
 
-- OWLLink and Racer support.
+- Other output formats apart from RDF/XML.
 
 
 Inference:
 
-- DataPropertyAssertion, DataPropertyHierarchy, DifferentIndividuals,
-...
-
+- Support for DataPropertyAssertion, DataPropertyHierarchy,
+DifferentIndividuals, ...
 
 
 
@@ -87,10 +95,11 @@
 
 Copyright (c) 2011 Mikel Egaña Aranguren. 
 
-(OPPL|Inference)-Galaxy is free software: you can redistribute it and/or
-modify it under the terms of the GNU General Public License as published
-by the Free Software Foundation, either version 3 of the License, or (at
-your option) any later version.
+(OPPL|Inference|Query)-Galaxy 
+is free software: you can redistribute it and/or modify it under the
+terms of the GNU General Public License as published by the Free
+Software Foundation, either version 3 of the License, or (at your
+option) any later version.
 
 This program is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of