Mercurial > repos > mikel-egana-aranguren > oppl
diff OPPL/inference.xml @ 17:c9e01f86b07c draft
New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
author | Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> |
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date | Mon, 20 Aug 2012 11:39:56 +0200 |
parents | 68c4ae500a13 |
children | d3616fac4ca5 |
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--- a/OPPL/inference.xml Thu Aug 02 09:22:57 2012 +0200 +++ b/OPPL/inference.xml Mon Aug 20 11:39:56 2012 +0200 @@ -1,10 +1,10 @@ <tool id="inference" name="Perform inference in an OWL ontology" version="1.0.1"> <description>It performs inference in an OWL ontology and it generates a new ontology with the inferred axioms as asserted axioms</description> - <!-- For big ontologies I use -Xmx7000M -Xms250M -DentityExpansionLimit=1000000000 If that's too much for your machine simply delete or modify at will, but since Galaxy is usually used in a server setting it makes sense to use a big chunk of memory --> + <!-- For big ontologies I use -Xmx3000M -Xms250M -DentityExpansionLimit=1000000000 If that's too much for your machine simply delete or modify at will, but since Galaxy is usually used in a server setting it makes sense to use a big chunk of memory --> <command> - java -Xmx7000M -Xms250M -DentityExpansionLimit=1000000000 -jar ${__tool_data_path__}/shared/jars/inference.jar $input $reasoner $axioms > $output + java -Xmx3000M -Xms250M -DentityExpansionLimit=1000000000 -jar ${__tool_data_path__}/shared/jars/inference.jar $input $reasoner $axioms > $output </command> <inputs> @@ -25,14 +25,14 @@ <outputs> <data format="text" name="output" /> </outputs> - <tests> + <!--<tests> <test> <param name="input" value="test.owl"/> <param name="reasoner" value="Pellet"/> <param name="axioms" value="CLASS_ASSERTIONS,CLASS_HIERARCHY,OBJECT_PROPERTY_HIERARCHY"/> <output name="out_file" file="test_new.owl"/> </test> - </tests> + </tests>--> <help> **About Inference-Galaxy**