diff OPPL/src/GalaxyOWLAPI.java @ 17:c9e01f86b07c draft

New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files

--- a/OPPL/src/GalaxyOWLAPI.java	Thu Aug 02 09:22:57 2012 +0200
+++ b/OPPL/src/GalaxyOWLAPI.java	Mon Aug 20 11:39:56 2012 +0200
@@ -49,6 +49,7 @@
 import org.semanticweb.owlapi.util.InferredSubDataPropertyAxiomGenerator;
 import org.semanticweb.owlapi.util.InferredSubObjectPropertyAxiomGenerator;
 import org.semanticweb.owlapi.util.OWLEntityRenamer;
+import org.semanticweb.owlapi.util.OWLOntologyImportsClosureSetProvider;
 import org.semanticweb.owlapi.util.OWLOntologyMerger;
 import org.semanticweb.owlapi.util.SimpleShortFormProvider;
 import org.semanticweb.owlapi.vocab.OWL2Datatype;
@@ -62,7 +63,7 @@
 /**
  * A wrapper of the OWL API 
  * 
- * @author Mikel Ega��a Aranguren
+ * @author Mikel Egana Aranguren
  */
 public class GalaxyOWLAPI {
 	private OWLOntologyManager manager;
@@ -109,10 +110,13 @@
 		reasonerFactory = new Reasoner.ReasonerFactory();
 		reasoner = reasonerFactory.createReasoner(ontology);
 	}
-	public void merge () throws OWLOntologyCreationException{
+	public void merge (String ontologyIRI) throws OWLOntologyCreationException, OWLOntologyStorageException{
 		OWLOntologyMerger merger = new OWLOntologyMerger(manager);
-		IRI mergedOntologyIRI = IRI.create("http://oeg-upm.net/oppl_galaxy/merged.owl");
+//		OWLOntologyMerger merger = new OWLOntologyMerger(new OWLOntologyImportsClosureSetProvider(manager, ontology));
+		IRI mergedOntologyIRI = IRI.create(ontologyIRI);
+//		OWLOntology merged_ontology = merger.createMergedOntology(manager, mergedOntologyIRI);
 		ontology = merger.createMergedOntology(manager, mergedOntologyIRI);
+//		manager.saveOntology(ontology, new RDFXMLOntologyFormat(), new SystemOutDocumentTarget());
 	}
 	
 	public OWLClassExpression parseMOSClassExpression (String expr) throws ParserException{