Mercurial > repos > mikel-egana-aranguren > oppl
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author | mikel-egana-aranguren |
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date | Tue, 06 Sep 2011 14:55:49 -0400 |
parents | 46b9d13a44fc |
children | 5255f1333cc4 |
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<tool id="oppl" name="Execute an OPPL file against an OWL file" version="1.0.0"> <description>It executes an OPPL script against the input ontology and generates a new ontology with the changes described in the OPPL script</description> <command>java -jar ${__tool_data_path__}/shared/jars/oppl_galaxy_tool.jar $input $OPPL > $output </command> <inputs> <param format="text" name="input" type="data" label="Source OWL file"/> <param format="text" name="OPPL" type="data" label="OPPL file"/> </inputs> <outputs> <data format="text" name="output" /> </outputs> <tests> <test> <param name="input" value="test.owl"/> <param name="OPPL" value="test.oppl"/> <output name="out_file" file="test_new.owl"/> </test> </tests> <help> **About OPPL-Galaxy** OPPL-Galaxy can be used to execute an OPPL script against an (OWL) ontology, generating a new ontology. OPPL (Ontology Pre Processor Language) is a high level scripting language, based in the Manchester OWL Syntax, to automate the manipulation of an ontology (Adding or removing axioms). An OPPL script (See bellow or test.oppl) defines a query to be performed against the ontology, and some actions that affect the entities that will be retrieved. Those entities can be named or defined by a variable. OPPL is a powerful method for defining and executing modelling patterns that are repeated in a given ontology, saving time and effort. **Formats** OPPL-Galaxy uses the OWL API, and therefore can work with any ontology format that such API is able to load. That includes: OBO flat file, OWL (RDF/XML, OWL/XML, Functional, Manchester), turtle, and KRSS. **Usage** An ontology and an OPPL file are needed (test.owl and test.oppl can be used as samples). Load both with Get Data >> Upload File from your computer. Then execute the OPPL file against the OWL file with Ontology Pre Processor Language >> Execute an OPPL file against an OWL file. This is the OPPL script provided in the bundle, test.oppl. Variables start with ?: ?whole:CLASS, ?part:CLASS SELECT ?part SubClassOf part_of some ?whole WHERE ?part != Nothing BEGIN ADD ?part SubClassOf part_of only ?whole END; **More information** http://oppl2.sourceforge.net/ http://owlapi.sourceforge.net/ http://www.w3.org/TR/owl2-manchester-syntax/ http://clarkparsia.com/pellet **Features that will be implemented soon** OWL import closure Choose output format (Right now only OWL RDF/XML is available) Choose reasoner (Right now only Pellet is available) **Contact** Please send any request or comment to mikel.egana.aranguren@gmail.com. </help> </tool>