annotate galaxy-dist/tools/sparql_galaxy/SPARQLGalaxy.xml @ 4:6501986529b0 draft

HTML or tabular option added

<tool id="SPARQLGalaxy" name="Execute an SPARQL query against an RDF file" version="1.0.1">
	<description>It executes an SPARQL query against the input RDF file and generates an HTML file with the variables and bound entities</description>
	<command interpreter="python">
	  sparql.py $ontology "$pasted_query" $out_format > $output 2>/dev/null
	</command>
	<inputs>
		<param name="ontology" type="data" format="rdf" label="Input RDF file"/>		   
		<param name="pasted_query" type="text" area="True" size="10x50" label="SPARQL Query" value="SELECT * WHERE { ?s ?p ?o }">
		  <sanitizer sanitize="False"/>
		</param>	
		<param name="out_format" type="select" label="Output format" help="">
			<option value="html" selected="true">HTML</option>
			<option value="tab">TABULAR</option>
		</param>

	</inputs>
	<outputs>
		<data format="html" name="output">
		<change_format>
			<when input="out_format" value="tab" format="tabular" />
		 </change_format>
		 </data>
	</outputs>
	<help>

	  
**Important note**

  RDFLib must be installed on the system (http://github.com/RDFLib/rdflib).

**Usage**

  An RDF file (in any format that RDFLib can accept) and a SPARQL query are needed. See bundle for examples.

**More information**

  Galaxy public instance with SPARQL-Galaxy pre-installed:
  
  http://biordf.org:8983/
  
  RDF:
  
  http://www.w3.org/standards/techs/rdf
  
  SPARQL: 
  
  http://www.w3.org/standards/techs/sparql

**Contact**

  Please send any request or comment to [e-mail].

	</help>

</tool>