Mercurial > repos > mikel-egana-aranguren > sparql_galaxy
comparison galaxy-dist/tools/sparql_galaxy/SPARQLGalaxy.xml @ 3:24ad2706526c draft
Reimplemented in Python, using RDFLib
author | mikel-egana-aranguren <mikel.egana.aranguren@gmail.com> |
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date | Fri, 25 Apr 2014 15:42:31 +0200 |
parents | |
children | 6501986529b0 |
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2:b8bf1af83841 | 3:24ad2706526c |
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1 <tool id="SPARQLGalaxy" name="Execute an SPARQL query against an RDF file" version="1.0.1"> | |
2 <description>It executes an SPARQL query against the input RDF file and generates an HTML file with the variables and bound entities</description> | |
3 <command interpreter="python"> | |
4 sparql.py $ontology "$pasted_query" > $output 2>/dev/null | |
5 </command> | |
6 <inputs> | |
7 <param name="ontology" type="data" format="rdf" label="Input RDF file"/> | |
8 <param name="pasted_query" type="text" area="True" size="10x50" label="SPARQL Query" value="SELECT * WHERE { ?s ?p ?o }"> | |
9 <sanitizer sanitize="False"/> | |
10 </param> | |
11 </inputs> | |
12 <outputs> | |
13 <data format="html" name="output" /> | |
14 </outputs> | |
15 <help> | |
16 | |
17 **Important note** | |
18 | |
19 RDFLib must be installed on the system (http://github.com/RDFLib/rdflib). | |
20 | |
21 **Usage** | |
22 | |
23 An RDF file (in any format that RDFLib can accept) and a SPARQL query are needed. See bundle for examples. | |
24 | |
25 **More information** | |
26 | |
27 Galaxy public instance with SPARQL-Galaxy pre-installed: | |
28 | |
29 http://biordf.org:8983/ | |
30 | |
31 RDF: | |
32 | |
33 http://www.w3.org/standards/techs/rdf | |
34 | |
35 SPARQL: | |
36 | |
37 http://www.w3.org/standards/techs/sparql | |
38 | |
39 **Contact** | |
40 | |
41 Please send any request or comment to mikel.egana.aranguren@gmail.com. | |
42 | |
43 </help> | |
44 | |
45 </tool> |