Mercurial > repos > mikel-egana-aranguren > sparql_galaxy

changeset 1:117a4b4c002d draft

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Added README but installation procedure not tested yet, pushed for backup
author Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
date Thu, 25 Oct 2012 18:35:25 +0200
parents 137f9a4a6337
children b8bf1af83841
files README
diffstat 1 files changed, 99 insertions(+), 0 deletions(-) [+]
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+INSTALLATION VIA MERCURIAL (RECOMMENDED)
+========================================
+
+1.- Stop Galaxy.
+
+2.- Move to galaxy-dist/tools/
+
+3.- Clone the SPARQL-Galaxy repository with mercurial: 
+
+hg clone http://mikel-egana-aranguren@toolshed.g2.bx.psu.edu/repos/mikel-egana-aranguren/sparql_galaxy
+
+4.- Move to galaxy-dist/tools/sparql_galaxy and copy SPARQLGalaxy.jar to galaxy-dist/tool-data/shared/jars/
+
+5.- Add the following lines to /galaxy-dist/tool_conf.xml:
+
+  <section name="SPARQL-Galaxy" id="SPARQLGalaxy">
+    <tool file="sparql_galaxy/SPARQLGalaxy.xml"/>
+  </section>
+
+6.- Start Galaxy.
+
+For updates: 
+
+1.- Stop Galaxy.
+
+2.- Move to galaxy-dist/tools/sparql_galaxy/
+
+3.- Pull changes and update working copy with mercurial: 
+
+hg pull
+hg update
+
+4.- Copy SPARQLGalaxy.jar to galaxy-dist/tool-data/shared/jars/
+
+5.- Only edit galaxy-dist/tool_conf.xml in case a tool (an XML file) has been added/removed.
+
+6.- Start Galaxy.
+
+
+
+MANUAL INSTALLATION (DIRECT DOWNLOAD)
+=====================================
+
+Download and uncompress anywhere you like, and then:
+
+1.- Stop Galaxy.
+
+2.- SPARQLGalaxy.jar to galaxy-dist/tool-data/shared/jars/
+ 
+3.- Create directory galaxy-dist/tools/sparql_galaxy/
+
+4.- Copy SPARQLGalaxy.xml to galaxy-dist/tools/sparql_galaxy/
+
+5.- Add the following lines to /galaxy-dist/tool_conf.xml:
+
+  <section name="SPARQL-Galaxy" id="SPARQLGalaxy">
+    <tool file="sparql_galaxy/SPARQLGalaxy.xml"/>
+  </section>
+
+6.- Start Galaxy.
+
+
+
+CONTACT
+=======
+
+Please send any request or comment to mikel.egana.aranguren@gmail.com.
+
+
+
+ACKNOWLEDGEMENTS
+================
+
+This work is funded by the Marie Curie Cofund program of the EU, FP7, 
+and the Isaac Peral Program.
+
+
+
+COPYRIGHT AND LICENSE
+=====================
+
+Copyright (c) 2011 Mikel Egaña Aranguren, Alejandro Rodriguez Gonzalez 
+
+SPARQL-Galaxy is free software: you can redistribute it and/or modify it under the
+terms of the GNU General Public License as published by the Free
+Software Foundation, either version 3 of the License, or (at your
+option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+JENA has its own license.
+
+