annotate test-data/test_out/extract_primers/extract_primers.txt @ 12:4b6590dd7250

Uploaded
author miller-lab
date Wed, 12 Sep 2012 17:10:26 -0400
parents 2c498d40ecde
children
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1 > Contig161_chr1_4641264_4641879 115 C T 0.323016
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2
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3 1 TCCGAACCGCTAAATCCTGACGACTGTTCAGTGAGAACGGGnTTCCAGCTCAGTGGAGAC
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4 >>>>>>>>>>>>>>>>>>>>
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5
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6 61 ACTCAGAGCTTATGTGATGCACCGTCGTGCCCGTGTCTGACTAAATGTGTTGCCAGAGAA
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7 <<<<
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8
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9 121 CAAAACGAAAGCCCCTATT
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10 <<<<<<<<<<<<<<<<
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11
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12 > Contig86_chr1_30984450_30985684 670 C T 0.031427
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13
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14 1 TAATTCATGACGACTGCAGAAGGGCACTCAGAGGCAATTCTACTTGAGGATATTGTCTGG
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15 >>>>>>>>>>>>>>>>>>>>
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16
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17 61 TATACTCTGTCCTTGCTCAGGACATCAGTGAGAACATAGAAACATTCACnTCCCCACACC
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18
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19
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20 121 GAAAGCGTCTGTAGACCGGCCCACGGGCCGAAGTCTTTGCATTTCCTCTTGCCATGCACG
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21
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22
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23 181 AGCATTCCCAGTGGCAATCAGGGGCCAGCCCTTCTGTTTGGCCTCTGCAAGCTTGTATCC
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24 <<<<<<<<<<<<<<<<<<<<
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25
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26 241 TTG
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27
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28
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29 > Contig21_chr1_60697952_60699446 307 G A 0.507396
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30
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31 1 TCTGGGGCCATGTTTCTGAAGTAAGGCTGTTTCTGCAGCCTTGCGGGCTGTGTCTTGCTC
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32 >>>>>>>>>>>>>>>>>>>>
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33
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34 61 nCACCCCTTAATTCTTACCTGTAGGTGGTATTTGGTAGAGTGGAGTAAAACTGGAAACTG
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35 <<
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36
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37 121 GTTCTCTGTGTTCCTGCATCT
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38 <<<<<<<<<<<<<<<<<<
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39
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40 > Contig64_chr1_87343284_87345672 163 T A 0.038702
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41 VspI
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42 1 ATGGCCAATTCTGGTTTAcGCATCATTGTTAACAACTCTTCCATTCATTCTCAGAATTTT
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43 >>>>>>>>>>>>>>>>>>>>
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44
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45 61 CCCAATTCACATGATAAATTGTATGGTCACCTACcTACAACTAAACACTTAGTTTATTTC
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46
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47
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48 121 TATTATTATTATTATTATTATTATTATTATTAnTAtTATTATTGAAATACATTTTTTTTT
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49
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50
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51 181 CATAAACCGTTCACcCTTGTGAGAAC
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52 <<<<<<<<<<<<<<<<<<<<
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53
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54 > Contig20_chr1_110679280_110679687 181 C T 0.659726
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55
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56 1 GAGCACTCAATGAGGGGTTCGACCCTTTGCAGACACAGCATGTAGGAGGAAGAAATGCAA
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57 >>>>>>>>>>>>>>>>>>>>
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58
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59 61 cGGGGCACCCCTGCGGGGGCAGGCTTCCAGTTCAAACTGATCnGGTCTGGTCCTGGGGCC
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60
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61
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62 121 GGGCCAAAGTTGTGGTTTCcCGCACTCAAGTCTCCAC
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63 <<<<<<<<<<<<<<<<<<<<
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64
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65 > Contig222_chr2_9817738_9818143 220 C T 0.092668
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66 SpeI
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67 1 AGATTTAGCTGGAGCATGCCTTTGCCCTTTTTAGCCTTTCCCTTTTACCTTTATCCTTCT
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68 >>>>>>>>>>>>>>>>>>>>
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69
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70 61 TATTCTTGAAATGTTGAAATAGATGGAAGTATAGCAGCTATCTTGTCCCATAATGATGAA
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71
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72
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73 121 AACCAGGTACAAAGTTGGTGAAAACTAAAAGAGAGGAGGAGCCTGGGTTCTTGGTGGCAT
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74
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75
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76 181 CATGAACACCTGCACnAGTCTAGCATGGTCTGTGCAAAATCTCCTGATCCAAGAAAAATA
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77
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78
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79 241 TAAACATCCTTCTGTAGGGTTTTATTgCCTGAAGCAAAA
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80 <<<<<<<<<<<<<<<<<<<<
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81
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82 > Contig47_chr2_25470778_25471576 126 G A 0.289103
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83 Bsp1286I
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84 1 GCCAGGCGTCCCTCTTTTTGAGTTCtAATTGTGTACATCCAATCCCCATCTCAACAAATA
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85 >>>>>>>>>>>>>>>>>>>>
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86
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87 61 GCTGAACCAGCTTCCTaTTTATTTGGTAGGTnAGCACTCTAGAAATTTGCTACACTGAAC
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88
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89
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90 121 TCACCAAATTTATAATGTaAATTATGACCATTCTTTGCCATAATAATTTGGGGTAGGTCA
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91
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92
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93 181 GATTTGGTTTTGGGGGCAGAAGAAATCATCATATCACAAGCATGTGACAGCTTCCAGCCC
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94 <<<
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95
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96 241 CATCTCAACTCCAAGAAATT
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97 <<<<<<<<<<<<<<<<<
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98
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99 > Contig6_chr2_56859179_56859956 671 T C 5.308026
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100 MspA1I
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101 1 TATCCCAAAGACGTGTGTCTCAAAGCCCTGAGGTTTACAGCCAAACATGATGGACTGCCC
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102 >>>>>>>>>>>>>>>>>>>>
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103
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104 61 ATGACAAcGGATACAAATGCTAGCgTGGGTTTAATTATGCTAGAATTTTTATGATAATTA
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105
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106
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107 121 TAATGATATTGTTATGAAGTATGCTAGGCTTTnAGCGGCTAGTCTCTAAACCTATTTTCC
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108
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109
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110 181 tTATAAATCCTTTTATTTTTAGTGCACTATTTTATAGAATAAGAGGTTTTTCAGGAACAC
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111 <<<<<<<<<<<<<<<<
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112
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113 241 ATATATTGCATT
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114 <<<<<<<<<
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115
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116 > Contig163_chr2_76402959_76404830 221 C T 0.178077
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117
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118 1 GCCCCTTCGAGTCCATCTTaCGCgCAGCAGCAGGAGGGATGGTCCCAACCACAAACCTAC
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119 >>>>>>>>>>>>>>>>>>>>
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120
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121 61 CCGCTGCCTGAACGCTTnAAGTGCCCTCCGAAGAAAGCCCAACTCCACAGCCTGGCAACT
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122
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123
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124 121 GAGGTCCTTGTGATCTTAGCTTCCTCTGCCCCACTCCACAGCTCAGCCTCACCgGACTCC
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125
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126
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127 181 CGAGCTCCTTAAAGGAGCCCCCGAGCCCCCGCACATGCTGTTCCCTGTAACCGGGTACTC
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128
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129
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130 241 CACGGCTCGTCTGTCCTTGGAGGCTCAGCTG
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131 <<<<<<<<<<<<<<<<<<<<
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132
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133 > Contig56_chr3_17326225_17327548 387 G C 0.224947
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134 AgeI,HpaII,MspI
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135 1 CAAAGGCAGTGATATGGGAGTGGAATGGAGAGGATGGGTGCCCCAGACTGGGTGCAGATC
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136 >>>>>>>>>>>>>>>>>>>>
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137
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138 61 TGTTCTATCTGGTGTTTGGTGGCTGACCATACnGGTGAGAAGAAGTGTcCAGGTTTCTGG
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139
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140
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141 121 CTTGATGATGCCGACAGTTATGGCAGGAAATGCTGAAGGGGTGCACATGAGCTCCTGTTC
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142
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143
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144 181 ATTCTTCACTCTTCCTCTTCTACCTCCAACCTTGCTACCTGTGTGTACCCGACTC
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145 <<<<<<<<<<<<<<<<<<<<
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146
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147 > Contig108_chr3_46210055_46210874 367 A G 0.027845
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148
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149 1 TTCACTCACCTGCTTCCCTGCTAACTGTCACCGCCCTCCCAATGCCTTAAACCAGCTTAG
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150 >>>>>>>>>>>>>>>>>>>>
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151
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152 61 AAACACAAAATTTAAAAAACATTATGTTGAGACAAAAATATGTATAACCTGGAATATTGA
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153
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154
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155 121 ATAACAAAATGAAAGGGAAAATGATTCAAGAACACTTGGATAAGGAAAACTACAAATATT
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156
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157
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158 181 nAAGATGTACCTTTGAACTTCCTATCACTGAAAGCAACCATGGAACCAGTACAATGTAGA
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159
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160
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161 241 CCTTCTGATCTGACTTTCTTTTGTCTCTTGCTGCTGGGAAGTAGAATGCCCC
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162 <<<<<<<<<<<<<<<<<<<<
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163
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164 > Contig1_chr3_51588422_51589409 926 A G 1.147200
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165
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166 1 AGATTATGGCCTGTGTTTACcCCAGCCTcGCAGAACATTTTACTGGGGACACCTGCCAGG
2c498d40ecde Uploaded
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167 >>>>>>>>>>>>>>>>>>>>
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168
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169 61 TGGCAGATCAGAAGCCCGTGAGGCAGCCAGCCAATGGGAtGGCCAAAACCTAGGGCTTCG
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170
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171
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172 121 TAnGGGAGGGAGATGTTTTCCTCgTCCCTCT
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173 <<<<<<<<<<<<<<<<<<<<
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174
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175 > Contig65_chr3_80727952_80728283 39 T C 7.077725
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176
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177 1 CAAAGGCTTACTTTTTaGATCAACACTCTAAATTCTTAAnAAACAACAAAGCCAAATTTT
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178 >>>>>>>>>>>>>>>>>>>>>>>>>>
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179
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180 61 CCTATATCATTGAGTAGTTGATACGTCTTTGGTTTTGCGCTAGCAGT
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181 <<<<<<<<<<<<<<<<<<<<
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182
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183 > Contig134_chr4_12145648_12148225 1326 C T 0.079565
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184 BalI
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185 1 AACCCAGAtCAGAAACGTCCCATGGCTAGTCATCTTCCTACACAGACTTCTgAGAGCCAA
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186 >>>>>>>>>>>>>>>>>>>>
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187
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188 61 GCATCGTCAAcCGGCCAtTCTnGGCCATTCTCCCGAGCAGATGCTGCCGGGATAATCTGC
2c498d40ecde Uploaded
miller-lab
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189
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190
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191 121 AGCATGAAGCCCTCCCTCGGGGGAGACCCGACcgGGTCCACACAGGTCTGTcTAGC
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192 <<<<<<<<<<<<<<<<<<<<
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193
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194 > Contig19_chr4_26233601_26233991 146 G C 0.163005
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195 DpnI,MboI,Sau3AI
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196 1 AATTTGGCTTCCTCTGGAGTtGTCCCTTAATGCTAGGTATCAAGTGCTGACAGGCCACAG
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197 >>>>>>>>>>>>>>>>>>>>
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198
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199 61 ATnAGGGTAACACATGATTACAGGGCAACACACTGTAACACGTATTCCCTTGCCTTGTCT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
200 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
201
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
202 121 T
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
203
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
204
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
205 > Contig17_chr4_61310346_61311158 267 C T 0.097708
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
206
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
207 1 TATTCCAGACCAACCAAAAGGTCTAAGGAATAATAGAAGCTTCACCCACAGACCTGCCAC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
208 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
209
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
210 61 CCAACTTGAGAAACAGCACTTGCTTCCTCATAGAGTCGAAACGTCTTCGGTGGGTCCCCT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
211
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
212
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
213 121 CCTGAAGCATCACCGCTACCTTTCCTCTTGGGAGTCACTGCCACCCnGAACTTGTTGCTG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
214
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
215
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
216 181 CTTATTCTCTTTTATTTTTCTTGTTTTTGAAAGAACCCTGTCTTGGGTGTTAGGATAC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
217 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
218
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
219 > Contig31_chr5_4734956_4736547 1166 C T 0.020932
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
220
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
221 1 TGTTCTGCCATGCACACTTCTTCAACCCTTCAACCTGTGGGAGTCACCTCACATTCCCAC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
222 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
223
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
224 61 AGcGAATGGAATATCTATCTATCTgnCTTTAGGGATTTGTTACGTTTTCTTTTTCTTCCT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
225
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
226
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
227 121 TTTCCTTCCAATATCTTAATGGGCAATTTTGTGGACAGTTGATAGAGACAACGTCAGGAG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
228 <<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
229
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
230 181 CTGTTGGCCTAGTAAA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
231 <<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
232
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
233 > Contig6_chr5_26899813_26900498 97 A C 7.369943
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
234 AvaII,Sau96I,SinI
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
235 1 AACTGAAAGTGAGAATTCTTTGTATTTGCTAGTCAAAAGGATTTCTAAGTCAAAAAAGTA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
236 >>>>>>>>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
237
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
238 61 ATTTGGGAnCATTAAGTCATATTTATAGACTAAAATTTCATTCCTAAAGACAATTTAGTA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
239
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
240
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
241 121 AAAATGCTAGGCTTTCTAGAAATTTAACCTAACATAAAAAATTACAGTAAGTTTGCTAAA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
242
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
243
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
244 181 GAATCACAGAGTTGACTGACAGTTTCCCAGGTTA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
245 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
246
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
247 > Contig45_chr5_50892738_50892968 169 C A 0.496871
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
248
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
249 1 TGAAAGGGGCACTGGGAATTATCAGAACCTTCTGGGTAATTAAACTGGGGAAAGCATAAT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
250 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
251
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
252 61 ACCATTTAGAAAAAGTTCAAGTGAGTCTTTTCCTTATTCTCCCnTGTACCCAGAAAAACC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
253 <<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
254
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
255 121 TGGACATGGTAC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
256 <<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
257
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
258 > Contig45_chr5_76133561_76134403 388 A G 0.038045
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
259
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
260 1 CATGAGCATGCTGTCTGCACAAtGGGAGCACCCGTGATGTGAGAGTAGCCAGGCCACCCT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
261 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
262
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
263 61 GGCTTGAGTGCTTTGTCCAAAAGGCACAATGGGAACTACACAGAAACAATCAGATTCACT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
264
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
265
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
266 121 GCCTTCGAGGGTTTGAAGAAGACAGCTGAAGAGTAGGAGGTAGAAnCAAAAAGGCATGAG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
267
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
268
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
269 181 AGGGGGAAGCAGAGGCTGCAAGACATGAGCTGGGCAGTACTGACgGGCCACACAGAGCAC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
270 <
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
271
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
272 241 TGGAGACAAGGTCAGGAGCCCT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
273 <<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
274
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
275 > Contig111_chr6_5821219_5822519 1060 A G 0.230765
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
276 AvaI
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
277 1 CGTCAGAGCTGTCTTCCCTCCAGCCAGAGGGGCCCTGAGAAGGAAGGGGGCTGAACCCAG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
278 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
279
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
280 61 GCgCCAGCCCAAGCTGCAGCGTGATCTGGGGGTGAGGCCCCCCGCTGCACAGGGGGCACG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
281
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
282
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
283 121 GGGGTTCGGGCAGAGATCGGCTACCCATGGCCGGCGAGGCCACAgTGGCAATGGGCAGCC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
284
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
285
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
286 181 AGCCTCCGACCAGCcGCCCCCnAGCTGCCTATTTAAGTCAGGAGCTTCTCCTTCCCgTGG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
287 <<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
288
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
289 241 AAGTAGAGGACAAATT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
290 <<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
291
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
292 > Contig102_chr6_30271329_30271577 39 T G 1.158547
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
293
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
294 1 TCTTCCTTTATGCATCAGGGCAGCACCCTGGGGAGAAGnGGGGGGGACAcGTGTGTCCTG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
295 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
296
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
297 61 GGGAAAGGGGTGTTCCCACTCCCTGCAATGCCTTCCCCCGCCCAGACCAGCAGTTCTCAG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
298
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
299
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
300 121 TCTTGACTGCATGGACTCTCCTGGAAGGCTTTAAAAAATGTGGAGGCCGAGGCTTACCCA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
301
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
302
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
303 181 tGACGGTTCTGACTGAATTGCTCTGGAGTAGGGCTTAGGCACTG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
304 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
305
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
306 > Contig112_chr6_51024554_51024851 100 A G 4.286925
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
307
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
308 1 CTTCATCATACCTATCATTGCCTATCGTTATACTATAGAGGTATTGTTCATTCTTTTTTA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
309 >>>>>>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
310
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
311 61 TAGACTCATTGAGTAAAACTCAGGnCATGAGGGAAGGAACTTTGTCTCTTGTGCAATTCC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
312
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
313
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
314 121 CTATCCTCAGTCCTTAAATATATGTATGCTAcCCAATAGGCACCAAATAT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
315 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
316
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
317 > Contig84_chr7_6648683_6650255 1297 G A 0.165637
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
318
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
319 1 GTTAGTTGTGAACACTCCCCAGGTAAACTGGTGTAACTCTTGGGGCAAAGCATGGAGTCT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
320 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
321
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
322 61 ACCCAAAAATGTAGAATTCTGCAGAGACAGCTGTTTCTTGGTTGGGTTTCTAGACCAGAA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
323
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
324
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
325 121 AATAGAAGATTATAATTATGGGTGGGAAATATATGTGCAAAAAAGTATAAAAGAAGAGGA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
326
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
327
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
328 181 ACAGAATAAAnGGAAATGGAAATGTTTGTAATTGATAGGGATGTGGATGTAAATGCCTGG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
329 <<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
330
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
331 241 CAGAGAGGAGG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
332 <<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
333
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
334 > Contig206_chr7_26281823_26282074 103 C A 0.947486
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
335 NheI
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
336 1 ATCCACATTCGCACAGCTCCTAATATAATATTTCATTGTTAAAATACTTCTGATTGGCCT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
337 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
338
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
339 61 AGGACATATTTTTACAACTGCCTTGACTTCAATTGCTAGnAGTAGCTTGCCAAAGAgGTG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
340
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
341
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
342 121 CTTTAATAAAGGAAATTAACTTCTTTTAATATGTTGACTGATATACCAAGGTTTTAGTGC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
343
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
344
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
345 181 TATTAGTTTACCTTCCCCAAAAGTGCTTA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
346 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
347
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
348 > Contig38_chr7_50681997_50682600 42 T C 0.145997
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
349
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
350 1 TAGAGCTCTCAGCATCCAAGCAGAATCTACTGGGTCTGACTGnGTTCTGCTCTGTCACTG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
351 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
352
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
353 61 GAATGACATTTCATTGCAGAGTACTCCTGCAGTACAACCAGGGCACAGCCTTTAAATTGA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
354
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
355
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
356 121 CCATGTCCCCTGGTCTaCTCTGCTGAGCTaTGCACGGGTCCCTTCTGGTTCAAACACAGA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
357
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
358
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
359 181 CTGATACAGCTCAGATGGAAGGGAGGCAGTTGCAGAGAAACAAA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
360 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
361
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
362 > Contig91_chr8_12804505_12805470 409 C A 0.175272
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
363
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
364 1 CTGTTTTCAGGGGCTACCTGCTATCTCCAGAACATGCCTGGCTCTCCTCCAAACACTGTT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
365 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
366
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
367 61 CAAnCTGACCAAAGCAGAGAGCTGTATATGGACCACACATACCAAAAAAAAAAAAAAGAC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
368
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
369
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
370 121 AGTCCACACCCTCTGTATAATTATATGGTACAAATAATAGAGTTTTTGTTAACTACCAGC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
371
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
372
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
373 181 TCTTTTTACAAAGCCTATCAAgTATCATAGACAGTATAATGCTGTGATTGCATCTGTGAA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
374 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
375
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
376 241 CC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
377
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
378
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
379 > Contig8_chr8_27811135_27812620 333 C T 0.272485
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
380
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
381 1 CTTCAAGGAAAGGAGGCAGTTTGGACAAGTCAAAAAAATCCCAAAACtTTGTACTATATA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
382 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
383
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
384 61 AATCTGGCATATTTGTTGATGACanAATTGAGTTAGAAGCAAGAGTCAGAAGCTGACTTT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
385
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
386
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
387 121 CATGCTGTTTTTCTGTTGTTTTCTGCGGCTCCCCTATGTACTAGTTCTCTTCCgGTGTGC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
388
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
389
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
390 181 TGACAACTTCCAACTTcTCATAcCCTCTGCATTTCACGTTCTGC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
391 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
392
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
393 > Contig17_chr8_57490059_57490498 69 G T 0.522227
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
394 BglII,DpnI,MboI,Sau3AI,XhoII
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
395 1 CACCAGAAAACAGGCATGGAACAGATTCTTTCAnATCTTTAAGAACAAACCAGTCCTGCT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
396 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
397
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
398 61 GACACATAGATTTTTGGACTTTTGGCCTCTGTAACTGTGAGAATAAATTTCTATTTTAAG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
399
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
400
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
401 121 CCATCTACTTTGTAGTAATTTGTTATGGCAGCCCTGAGAAATTA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
402 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
403
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
404 > Contig73_chr9_29451535_29452248 616 A G 0.448230
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
405 Eco47III,HaeII
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
406 1 ACCCAAGAGTCTGAGAGGCCCAGAGGCAGCTGGAGGCTGGAGGAGTCCCaCAGGCAAACC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
407 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
408
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
409 61 CTCCATTCCATGCGCCCCAGGGAGGCCAGGAAATCAGCnCTCCCAGGAGCAGGGAAGCAG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
410
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
411
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
412 121 CAGTCCCTGGCATTGCCAGGGCAAGTGGCCACTCAGGGGAGAAAGGGGTGAGCTGGGGAG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
413
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
414
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
415 181 GGGGAAGAGGGGAGGGGAGGGAAGGCAGAGACGAAGAGAA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
416 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
417
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
418 > Contig96_chr9_39008495_39009278 215 A C 0.426539
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
419 SspI
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
420 1 TGGCAAACTCCTTGTGAATGCCACTACACTTTCTGGTCTCTGTATGTAATGCTAGATATT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
421 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
422
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
423 61 ACTGACACTTACcGCTACAAAGGCAAGACAAGCAAGACAACTGACATACACCCAgGTATG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
424
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
425
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
426 121 GATCTATGAAGGGAGCTCCTTCTGCTAGAAAACAATATGTAAnTATTTACaTAACACCTA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
427
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
428
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
429 181 CAATTCTAAATGGGTAGTTTCCCACATGTGAGATTACATCTTCAAGAGCCAAAGGACAAT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
430 <<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
431
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
432 241 TTGTGCATC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
433 <<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
434
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
435 > Contig22_chr10_15505382_15505589 172 T C 2.860867
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
436
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
437 1 CGCAGGCGCCCCAATTATTCTTAACTCCTTATCAAAAGTTTTCCTAATTGAAACTTAAGC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
438 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
439
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
440 61 ATCACCTGTTTATTTCCTCTAAAATAAATGTATACATATAGAATTTCAGTAAGATAATGT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
441
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
442
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
443 121 CTCAAAGAAGATGATAGCCATGGGAGAGGCTTATATGTACTTCnTATAATAAACAACGTC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
444 <<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
445
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
446 181 CAGGTGTGATATT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
447 <<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
448
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
449 > Contig69_chr10_40547265_40548153 371 G A 0.137642
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
450 Bsp1286I,CfoI,HaeII,HhaI
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
451 1 AAGGGGAAGAACTGAAGCGAGTGAGAAGCACGGAAGGACTTTTAGGTTTACAGCTGGGGT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
452 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
453
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
454 61 CACTGGTCTTCGCTATGGATGCCTCTCTTAAAGGAAAGACTAATTCTCTGTGGGTACTGA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
455
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
456
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
457 121 AGGTGgGAGATGAATGTAGATGGGCnCTCGCATGTGTCAATGCTGACGGCTTGGTGAGAG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
458
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
459
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
460 181 GTTTGGTGCGAGGCCAAAAAGGCgGGGATgAGAGAAGGATGACCTAGGGAGACTGCAGGG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
461
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
462
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
463 241 TATTTAAAAGTTTGGGTCCAATTTTTCTCAAAGTGTGGCCAGTGCAC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
464 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
465
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
466 > Contig9_chr10_51475063_51476054 770 C T 0.393903
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
467
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
468 1 GTCTTCCTTCTAATCCCCaAGCcGTGAGAAGCTGTCTGAGCGCTCCTTGCTGGGCGTCCC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
469 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
470
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
471 61 TGCATGCCTGTACTGGGGCACACCTACGCCCTGGGTCCTGCTnCTGAAACGGTGTCTCAT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
472
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
473
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
474 121 TTCTGTAATCGCTCCAAGCTTAATGGCTCTCAGCCTTGTGGGTTGCAGTGGAGAGAAAGC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
475 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
476
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
477 181 ATT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
478
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
479
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
480 > Contig72_chr11_7142765_7143772 146 G A 1.137400
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
481
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
482 1 GGTGTAGTGAGGCTTCCACGAGCAGCCAGGCTTACAAACTCATCCTTAGCCTAAAAACTC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
483 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
484
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
485 61 CACnAAGTCAAGTATCTTGTGGGTGTTGAAAACTGTTCCACTCTGCAGAGCACCTCTATA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
486
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
487
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
488 121 TGAAGTAATAATCATGGTATAATGTCCTTCTTCACATACCTGCCAAGAT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
489 <<<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
490
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
491 > Contig7_chr11_40017076_40017630 352 C T 0.336170
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
492
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
493 1 TCGGTCCTTCCTTGATCACATCTCCATGATCCTCCCACTGTTACTTGGAGGAGAATTGTT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
494 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
495
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
496 61 GCTTCCACAAATCAGATCTCTTTATTTTTCATTTATTCAACAAATGTGGACTGAGCTCTT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
497
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
498
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
499 121 TGtATAGTACATTCTGTGGGCACTATTCACTAGACACACTGTAAACACTTCTGCTTCCTG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
500
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
501
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
502 181 ACTTTGTTCAGATCTACCCCCnTGCCTGATCTGCCCTCCCCACCTGGTTTTCATCTCAGG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
503
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
504
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
505 241 CTTAGGTCAAGCCTCATtTGCACTTC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
506 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
507
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
508 > Contig16_chr11_53408448_53408790 187 A G 1.366749
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
509
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
510 1 ATATTGCCAGTTTTAATGGGTGATATTTAGTCCTCCAATTAGACCTCTTTAGTGCATTGG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
511 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
512
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
513 61 ATACCAGTGAGCAATCATTCTGACAnAATTTCTGCTGCCTTGATTTTTGTGACAA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
514 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
515
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
516 > Contig21_chr12_18403415_18404381 586 G T 0.068025
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
517
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
518 1 AGTTCCAATGTCAGAGTCCCTCCCTCTACCTCCTATCCAACCcGCTACTTTTTTTnTTTT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
519 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
520
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
521 61 GTTTTACAACAAAAATAAACCTTCTTGTAACAATTCCAACAATTACAAAATAGAGTAAAA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
522
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
523
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
524 121 TGTTTAAGTCTCTACCTAAACACACTCATCCTCAGAGAAACTCACAGGTAATTTCGGTtC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
525
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
526
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
527 181 GTATCTTCCCAGACCCTCTTCTCAGcTTTCACACATACTACATACACATGAACTTCGAGC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
528 <<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
529
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
530 241 TGGCTGTT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
531 <<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
532
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
533 > Contig41_chr12_25565452_25566993 475 G T 2.230501
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
534
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
535 1 TTACATAGCcAAGTGGGAAACAAAGcTACATTTTTnAATATTAATAAATCTGTTTTTTTA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
536 >>>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
537
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
538 61 AAGGGTTaTTATACAATATTATCAAACTTCTTGTGAATGTCAGAATCCAGAACAAACCTA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
539
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
540
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
541 121 AAATCAGTAATACTTGGGAAAGACGCAAATAGTCCCTCTTTCCACT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
542 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
543
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
544 > Contig5_chr12_53880670_53882675 1221 A C 0.061001
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
545
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
546 1 AAGCCATCCATGTGTGTGCTTTCATAATATATTATGACAGGAGATTAAATTCTAAGTAAA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
547 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
548
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
549 61 GATTAGTCCCCAGTACAGTAGTGTAAAATAGGACTTTTCTCCCTTTTTCTCTCCnCGATA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
550
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
551
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
552 121 TTCCAAATCAGAGTTTGGCCAAAAAgAAGTCAATAAGGACTTAcAAAAAAAAAATCTCCA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
553
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
554
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
555 181 TTCACTGAAAGTAGCTTGCTAGCATTTTCCTTTCTcCTGATGTTGCTCCATAACTTCAAC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
556
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
557
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
558 241 CCTTTTTAAAACTGTCTACTGTGGGGTAGACAGAAGGCGTGGTCGTGAGGTAAAGGTCAA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
559 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
560
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
561 > Contig107_chr13_26045881_26046290 341 C G 4.509990
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
562
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
563 1 CATAGATTGCCTTTTCCAGTCcAGAAGTTTAGAACAGACTGCCCTGAGATCATGGTGGGA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
564 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
565
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
566 61 AATATAATACTCATTAGGTTgTTGAAATTCTTGTAGGAATGGAAGAATTTCAGCTTAGGC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
567
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
568
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
569 121 ATTCTGCTnCTGTATTCCCAGATTACAGTGGGAACTGTATGAAA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
570 <<<<<<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
571
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
572 > Contig251_chr13_28498333_28501066 864 T G 0.067573
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
573
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
574 1 GCCCTCTGGCTTCTGTTTGGGAGGTAGGGCGGGTGGGCAGGAAGGGAGGACGGTCGGGGT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
575 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
576
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
577 61 ATTGGTTCnCCTCCTCCtGCTGGGTCCCAGATGGATACAGGCCAGGTCTG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
578 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
579
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
580 > Contig55_chr13_53467708_53468101 221 T G 5.717222
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
581 HinfI
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
582 1 AATACGGTGAAGAGCAAATGAGAAACATTTCTTCAAACATTTGTAAAGTGAAAATATTTA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
583 >>>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
584
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
585 61 AAATGAAATAGATnCCAAATTTTTTCTTCCAAtGGATTATCTACTGGGTTCTGAATATCA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
586 <<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
587
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
588 121 CAAAGACAAATG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
589 <<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
590
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
591 > Contig48_chr14_11839435_11843272 3014 A G 0.907583
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
592
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
593 1 GTGCTTCCAGTCAAAGGGGAAAACTTGATAGACAAAAGTTTGGATTTTTTTTTTTTTCCT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
594 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
595
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
596 61 TCTCCTTGGGAGTATGTCTGAGTTACCGTTTTTAGTTTTGATCTGTGGAAAAAGTGATTA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
597
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
598
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
599 121 TATAGGTTCCAAATCTTACTTTTCCCTTTTTGTTTTCAATAGACTTTTTGTGATCATTTC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
600
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
601
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
602 181 AnCATAGTTTGTATTATTAAGTAGGGGTTTTtTTTTGTTTTGGTTTTTTTGTGGTTGTGC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
603 <<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
604
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
605 241 GTTGTAAG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
606 <<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
607
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
608 > Contig28_chr14_26905747_26909514 975 G C 0.116622
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
609 AluI
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
610 1 CTGGTACGTGCTTCTCCTCCTGCAGCCCACCGTTTACTTGGTAAGTCGCTGCCGATCCGG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
611 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
612
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
613 61 CGCCCCCGCAATCCCACCCTCGTCGCGAGGACAGACAACCAGGGGCGCGCGGGAGGAGGG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
614
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
615
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
616 121 TGAGACCGCCAGTTCAGCGGAGCAGCGTTCCTAGCGACCGTGTTGGAACAACTTTGGCAA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
617
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
618
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
619 181 nCTGGTCTTTGGATCCCTGCGGGATTTTTCGGGTTTCCCACCCTCATTTCTTGCTT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
620 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
621
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
622 > Contig64_chr14_56768376_56768902 473 C T 8.281311
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
623
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
624 1 ATAAGAATCTCCTCAGTAGAGAGAAGCCTGATCTACCATGATTTTATTTGAGTAAAACCA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
625 >>>>>>>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
626
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
627 61 TTGAAACAAACAnTTCAAGAAAGATGGTCAGAGAAGCAAAATGTAA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
628 <<<<<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
629
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
630 > Contig60_chr15_18493036_18494316 150 G A 0.125024
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
631
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
632 1 CGCCTGGAATAGCATGGTGCCTTTAGGAAATTACATCTAACTCTCTAGGGCTGGAAGGAA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
633 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
634
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
635 61 CACTGAGTnAACGTAAAGAATTGTGGGAGAGAAGCCTTTAGTTAGATCATGCAGGGCtCC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
636
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
637
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
638 121 GTGCTCCAAATGGGCTTTGTGTTTTG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
639 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
640
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
641 > Contig112_chr15_26772864_26773267 374 C T
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
642
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
643 > Contig119_chr16_6160274_6160477 180 G A
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
644
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
645 > Contig60_chr16_28079136_28080263 588 T G 5.998983
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
646 NsiI
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
647 1 TTAGAGAATTATTCACTCCCCCAAAAGTAATAAAAATATAAGAAACAAAGCATAATCATA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
648 >>>>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
649
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
650 61 ATGCAnTGGTTGAGTTAGTAGTAAATAACATTTTAGGGTCATAAATTAAAAACTGAATTG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
651
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
652
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
653 121 AGATTTAGCTGGAAATTGTGATATAAATGTCAGGATAAGAGAAGCAAGATTGAAAGAAAG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
654
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
655
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
656 181 ATGGATTAAAAATGCTAAATCCTTCTCTACTATTACAGGAAATTGATAAAAGAAGAGAGA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
657 <<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
658
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
659 241 GGAAACAGCACATAT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
660 <<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
661
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
662 > Contig31_chr17_12128267_12129637 205 G A 0.246305
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
663
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
664 1 TGGAGGCAATGGAGGTGAATGAGCCCCAGTCCTGGACCTCgAAGCAGACTGGCCAGAGAC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
665 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
666
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
667 61 ACCAGGATTTAAGGCATGTGATGAAGACACAGTTCAAAGTGACGAGCCCTGCAGACTCTT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
668
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
669
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
670 121 CnGGAGCAGAGgTAGAGTGATGACCCGTACCTGGAAGGTTTTAGGAAGGATAACAATGAA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
671 <
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
672
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
673 181 TTTACCAGAAGGCAGGGGTAGA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
674 <<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
675
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
676 > Contig99_chr17_26021506_26022200 505 C T 0.171977
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
677 RsaI
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
678 1 TGTTGCCATGTTGCCAGTATGTTTTTTTAAGTTTTCCTTTTTAATTTCATTTATGATATT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
679 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
680
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
681 61 TTTTGGAGTAnaGAAGTTATCATTTCACATGATCAACTTTTCAGTCTTTTTCTTTATAAT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
682
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
683
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
684 121 TTTTAAcTTTGTTGTCATGTTTAGAAAGGTTAAATTTATACCTTGTAAAATAcCTTCgCA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
685
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
686
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
687 181 AATTTACATTTGGGAAATTATTAGTAGTATTATTTcAGGAAGTTaTTATTTTTAAGTGTT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
688 <<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
689
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
690 241 GGGTTCCCGTGA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
691 <<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
692
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
693 > Contig27_chr17_61713766_61716585 1056 G C 2.199527
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
694 Eco47III,HaeII
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
695 1 AAGAGGCGCAGGAAGGAGAGTCCGCCcGCCGCAGCCCGCCCGCCGGCTCCTCAGACAGCn
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
696 >>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
697
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
698 61 CTCGCaGGTCCTCCAGCCTTCCAGCGAGAAGAAAGAAAGAGCGTCACCGGAAACCACCGA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
699 <<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
700
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
701 121 AACTCTGGGGTAGAGCG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
702 <<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
703
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
704 > Contig229_chr18_3706523_3708577 1076 A G 0.444778
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
705
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
706 1 TTTAAACTCCCGTGTCTGTGCTTGATTATGGCACCGTTAcTCTCGGACGTATTTAATTTT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
707 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
708
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
709 61 CTGATTCTGATTCATTGGTCTATTACATGAGCAATTGGTGGnAAGTGATGTCTGTCTGTG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
710
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
711
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
712 121 GCCCTTACATTATTTATAATAAAACTCTCCTTCAAAGAACCTTTGGACGATGTCTCCACA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
713
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
714
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
715 181 ATTACAGAATGAGTACAAATTAGTTTTCTAAAACAGCAACTGGTGGTTAATTAAGTTTTG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
716
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
717
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
718 241 TCATGTTTTCTGGAGATGAGTGTCTCATGGTTTGGATACTATGAAGGCATTTCTGCAAGG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
719 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
720
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
721 301 TT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
722
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
723
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
724 > Contig82_chr18_27305489_27306229 566 C T 0.348750
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
725
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
726 1 CCTGAGAACTTCAAGCTCAGCGGAGGGCTGAAAGGGAGGTAACCACTTTTGTACTAAATT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
727 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
728
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
729 61 GTCACCTCCTTGCTTATTTTCGTGAAGTTCTAAAGAACACAACTATCTCACTAACACAAc
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
730
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
731
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
732 121 AGATTTATTATTGAGTTGTCAGAATCAGCAGCTTTTAGTCACngGTCACTTGTGTGCCTC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
733 <<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
734
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
735 181 CACTCCATCATAACT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
736 <<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
737
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
738 > Contig64_chr18_55979770_55980315 49 G A 2.123800
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
739
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
740 1 CCCCAAGGAGACAGGAGGGCAGGCTGTGTGGGTTTCCTGGCCCGCAAnCCCTGTGCAGGT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
741 >>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
742
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
743 61 GCGgTTCTGCCAGGCCCGCAAATCTCGGTCTCACTTAACTGCGGCATCATTTATGCTAAT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
744 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
745
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
746 121 G
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
747
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
748
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
749 > Contig146_chr19_5221790_5223013 143 A G 0.869806
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
750
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
751 1 TTAGAATGGCTTTTTCACGGAAGGAGATGAGTTATAAAGTACGGgTGACATTTTTTTGTC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
752 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
753
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
754 61 TTGnGTTTTTTTTTTTTGTCTTGTTTTTAACTGTTGTTTAAGTCAGCCAACAAGTACATA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
755
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
756
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
757 121 ATTTCTCAGCCCACATTTAAAAATTATCAACTCATTTTCACTTGGAGGTGTGGACATAAA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
758
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
759
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
760 181 GCCATAAATATAATTTGCATTCTGCTGACCTGTTTC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
761 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
762
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
763 > Contig129_chr19_25541958_25542221 202 T C 2.550968
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
764 HinfI
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
765 1 AAGAATCAAGCATGCATTCTGCCTTCCCCATGTGAAAAGTACCAGGTGAGGATATGTACC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
766 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
767
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
768 61 TCTTTATATCCATGTTCCAAGAACAACAACAACAACAAAAGAATGAGAGTnACCACTTTA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
769
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
770
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
771 121 CAACCCCCAAAGAATTAATGGATT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
772 <<<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
773
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
774 > Contig60_chr19_54013816_54014398 281 A G 1.271267
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
775
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
776 1 ATTTCTCTCGCCGATATTGAGGTTAAGTATCCCTCTAGGCTAAAAGACCAGCAGCTTTTC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
777 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
778
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
779 61 TTAAACCTATTACAGGAATCCCAATAATGGAAAGAAACGAGGGGAGGCAGTGCTCATGTC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
780
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
781
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
782 121 ACATTCTTCCAGAAATCAAATATAnTGGGTTTTTTTGTTGACGTAAATACATAGGTTGGA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
783
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
784
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
785 181 AAAAAGGTAGGGGGAAAGGAAAA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
786 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
787
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
788 > Contig50_chr20_12138509_12141975 3206 C A 0.383804
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
789
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
790 1 TCACACCAGGCTCAAGGTTAAGGCAGAACACAAGATAAGAGAGCAAGCTGGCTTCCTGTC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
791 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
792
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
793 61 CCCCAGCTGGCtTnCCCATGGGAGCAGAAGCTGGATGGGTGCAGCTGCTGGCTAGGGATC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
794
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
795
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
796 121 CTGTAAAAACTGAAGACCTCCaGTCTCCAGGGCTGGAGGaGGGATTCCTGCCCTGGGGGC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
797
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
798
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
799 181 AGGCCaGATGAGAGGGATGCGATAATGGCAGGTGTCTCCACAAGA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
800 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
801
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
802 > Contig36_chr20_32631363_32632049 176 G A 1.149790
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
803
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
804 1 CTGCCCGAAACAAGTTCCTCATTGTTTCCTnCGTTCTGTGCTGTGGCGGTTTCTTCCTGG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
805 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
806
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
807 61 ACCCAGAGTCCTTTTCcGAACATTAGCAACTCCATTATGCCACACAGAGATGAGATTTGA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
808
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
809
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
810 121 GAAAGGAAAATAAAGTTGTCTCGTGATATGGAGGGCAAAGCTGATAG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
811 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
812
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
813 > Contig50_chr21_4178523_4178687 121 G A 0.483377
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
814
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
815 1 GTAGGAATCTCAAGCCCCAATCTACTTTTCAGGAAGCTGAGGCTCAGAGAAGTAAAGTAA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
816 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
817
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
818 61 CATGCTCAAATTCACACCAGTAAGTGAGAGAGTTnTAAGTAACTATAGTAAGTGACAGAG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
819 <<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
820
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
821 121 CTGGGATTTGAACCCTCAT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
822 <<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
823
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
824 > Contig129_chr21_31045749_31046924 381 A G 0.028026
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
825 AcyI,Hsp92I
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
826 1 CAGCTGAAGCACCCTCTCTGACCAAACCTGATCTTTCTTTTGGGGATCCTTGACnTCTCA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
827 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
828
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
829 61 TAAGTCTTTATGAACCATTTGTCCTTCCAGCCATCATTTCCTTCAAC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
830 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
831
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
832 > Contig159_chr22_7896450_7896974 109 G C 0.465232
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
833
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
834 1 TAACTGAGTGATAGTGCTTGGcGCAAGACACTAGCAAnCCTGTACTCACCTTCCATTCAT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
835 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
836
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
837 61 TTATGTCATAATAATAATTCTTTAAATATGGAAAGcGTAgAAACAAAATAGGAACACTGC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
838
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
839
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
840 121 TAAGTATTCATTTAGGTAATAAGTTTAGTGCTAGATGTGTGACAGGAATTATTTTcATTA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
841
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
842
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
843 181 ACCACAAGCAAACATTTATGGAATGTCCATTGCATGCTGAAATGTA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
844 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
845
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
846 > Contig23_chr22_34612023_34612568 167 C G 0.409430
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
847
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
848 1 TATTCTACCACTCAAAGCCAGCCTGAAGGAAnCCTGGGcTCTTTCCATCAGCTATCTGAC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
849 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
850
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
851 61 AAGTTGATCTAAAcgTGTAGAAAGCATGCCTGGCTCCACACCTGATTTCATGTGGAGCCA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
852
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
853
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
854 121 TCAGCTCTCACACGATCACCTTG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
855 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
856
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
857 > Contig26_chr22_57817664_57819633 1453 A G 0.471213
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
858 RsaI
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
859 1 TGCcCACCCACATCAcTGAACAATTCAGAGAAGATTCCTTTAACATATGCATTCAATGTT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
860 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
861
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
862 61 TAAGCCTCGCTAACATTTTTTAAGCACCGAACCTTTTTAAAAAGGGCTCTAAAAAATAAG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
863
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
864
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
865 121 CATGAAACTAAATCTCTCTAATACgTCACGTGACACACATGTAtATAACCCAGAAGGTnC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
866
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
867
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
868 181 ATCTAGGGAAACGCAAAAGGAATTATG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
869 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
870
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
871 > Contig133_chr23_3525134_3526502 1223 A G 1.358849
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
872
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
873 1 TCCTATTTTGTCCCCAAGTCCCAGGTTCAGGAGCTCCATTAAGTCACAGGTAATTCAGCT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
874 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
875
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
876 61 GAGAGCCTGCAAAATGGCAACCCCACCTGAGGCACTTTCTTTAAATCAACTGTATCAAGG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
877
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
878
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
879 121 TAACATTTACACAGAATAAnAAGCACTCATTTTAAAGAAATAGCTTGATGAGTTTAGTCT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
880
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
881
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
882 181 AATTGTATCTGTGTAGCCACcACACAGTCAAGATa
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
883 <<<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
884
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
885 > Contig35_chr23_28447813_28449115 70 T A 0.163155
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
886 DdeI
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
887 1 CCTTTTCTCTCCATTCACACCCCATCCTTCTTnGTCCCTCCAAAACTCCTAGCTGTTTCC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
888 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
889
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
890 61 CATTTTAGGGTCTCTGCATTTGCTGTTCCAAGCAAGCTCTGCCCCCAAATGATCTGGTGG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
891 <<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
892
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
893 121 CTTGTTCCCTC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
894 <<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
895
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
896 > Contig50_chr24_22515247_22516072 761 C T 0.190253
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
897
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
898 1 GGGGAGACCCTGATCCATCCTCATTCTACTGCTTCCCGATGTCCCAGGCCTGCtGTTCTA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
899 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
900
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
901 61 CACGAAAGCCCATTCngTGCCTCCAAGTAGGGAGCAGAAGGGAAGAACACA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
902 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
903
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
904 > Contig84_chr24_29196623_29199644 466 C T 0.214603
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
905
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
906 1 TAATTGGACaCTTTTGACTTGCGTTTCATGATTTTGCCCCATTTTTCTCTGCnGCAATTT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
907 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
908
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
909 61 GGCCAGTGATTCCTGTCTTTCCCTCTATTATCCACTCTGATTAACTCAGCTGCACCTGCC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
910 <<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
911
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
912 121 AGCCTTTATTCCTGCA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
913 <<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
914
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
915 > Contig144_chr25_4011170_4013134 541 A G 0.086768
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
916
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
917 1 GGTGAGGtGGAGAGTGGCAAGAGCTGTTGGTGGGCGTGTGTGAGCCAGAGGGCAAGCGGG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
918 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
919
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
920 61 GAGCTCCTAACTGCAAcATCCAGGGGCAGTCGATACTGCCTGGGAAGTAGGAACTGCTCT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
921
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
922
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
923 121 GGAGCATGAGTGGAATTAGCAGATGGATAACAAGGGAGnGCGAcaAGGGCATTTTATGAA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
924
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
925
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
926 181 GATGGAACACCTTGGAAAAGATCAGATTGCTGAAGCATCCGTTTGAGAAAGCACAGATAA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
927
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
928
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
929 241 CTTTTCAAATCTGAAGAGGAGGGACATGACGGGGAGATGAGACTAG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
930 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
931
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
932 > Contig103_chr25_38891221_38892140 407 G A 0.166581
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
933 Alw44I,Bsp1286I,CfoI,HhaI
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
934 1 GTGGGATGCAGGTGCTGTGTCTACCCACTTCTTCCGGGGACCAGCCCCTCTCTGGCCACA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
935 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
936
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
937 61 CCCACTTCCTCTCATCTTAACTGTCCAAATTTGCTGACTCAAAGGGATGTGTGTGCGTAT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
938
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
939
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
940 121 GTGTGTGTGTGCnCACATGTGCATGCATGTGTTTTGTGTCTTTCACTCTCAAAATTATTT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
941
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
942
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
943 181 AAGTTCCCATGGCCCTGCCCTGATTTATCTCCCAAAT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
944 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
945
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
946 > Contig204_chr26_4311195_4311778 170 C T 0.085422
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
947
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
948 1 AACAGAAGCCTGTCCCAGCTACAGGAGGGAAACGGGCTCGGCAgCgTGGCACTGCCTCAC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
949 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
950
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
951 61 tGTCACCCCCAGGAGCCCGGGAAGCCGTCCCTTGAnTCCTCAGTGACGGTGACCATGACC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
952
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
953
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
954 121 AAGGGCAGTAACTCTGCCCGCGGGACACAGCgCTCCTGCTCCCgACgGAAGGTGTGCCGG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
955
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
956
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
957 181 CCACAGAGCGCACGTTGgGGCCgAGTTCAGGGGCAGAtAGGAAGACACAGGa
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
958 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
959
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
960 > Contig146_chr26_26622638_26623906 574 G A 0.318381
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
961
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
962 1 TTTCTGAGATCACACAGCCAGGAAATGGGGAGCCAAGATTTGAACCCAAGCCTGTCTGAT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
963 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
964
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
965 61 TCTGGAACCTGCACCAGAaCCACACCTCAgCCCTGCCTTCCCTTGGAAGGCTtACcnTTG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
966
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
967
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
968 121 TGCCTGGAACATAGTAAGTGCTCAAAAAATGGTcTAAATCATCATCGTGTaTTAGGAAGC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
969
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
970
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
971 181 CTGGGTCCACACCCCTTGGGCTGTGGAGTGTCTTGAG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
972 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
973
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
974 > Contig135_chr27_6853874_6854079 158 C T 0.060201
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
975
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
976 1 AAAGGGTTCCAAGTTACGGGATTcATACGGGAAGGCTCCcGAAATAGAAATGATCGTTGT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
977 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
978
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
979 61 AACATGGGGAGATTTGTCAGGGACAgACAnGAACTGTCTTATAAAATGCAGCCCAGTTTT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
980 <<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
981
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
982 121 CTTcTTGAGA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
983 <<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
984
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
985 > Contig64_chr27_34654435_34654621 132 C A 0.296658
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
986 RsaI
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
987 1 AAATTGGTCAGTGACTGGGAACACGTTCCGAACCAGCTCCGTGGATTTACAAGTTTTCCA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
988 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
989
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
990 61 GTAGAAACGGTCCTCCAAGCGTnCCTGAAGTGCTcATTCATTACCGCAAGGTG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
991 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
992
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
993 > Contig131_chr28_6481806_6483783 138 C T 0.387007
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
994
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
995 1 AGaCCCTCGAAATTCTCCAGTTGTCAAATTCTTCCCCAGTnTCTGCTTGAgAGATTTTCT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
996 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
997
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
998 61 CCTAGCTTCAGAGCCTTAACTACAGAATACTGAGTCTTTGCTCAAGCAGCGGCTCAACAC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
999
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1000
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1001 121 ATAACCCCTAAGCTGCCAAGGCTTTTCTCCCCCAAGACTTTGTTTCCTTCCACGAAACCT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1002 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1003
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1004 181 TC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1005
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1006
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1007 > Contig60_chr28_30197166_30197364 92 T C 1.139483
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1008
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1009 1 AATCAGAAAGTCCCAGAGGTGGAGACTACAGCAAATTACCTGACATTTGTCTTTGATGCT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1010 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1011
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1012 61 nTATGTAAAAACTCTGGGTGGCAGGAAAGCACTTAAATTTACCTTGTAGAGCTTTGCTAC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1013
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1014
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1015 121 CCAATAGAACATTCTGTGCTGATGGGAATG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1016 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1017
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1018 > Contig29_chr29_4726399_4727143 559 A T 3.113735
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1019
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1020 1 CTTTTTGTGGCCAAAAgTGACAACATAATTTTCAAAATGGGAAACGATGATTACAAATGA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1021 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1022
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1023 61 GTGGAACACATGTTACAGTGGCAAGATGTGTGAGCAATGCTGATTCAGGGTATAATGGGT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1024
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1025
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1026 121 TGGTTGTAAAACAAATATGAGTTTCTAATATTCGGGCATATTAAACAATCTAAGTTnTAC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1027
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1028
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1029 181 AAAATCTCTCTTGTACTATTTATTGGGTAACTACTAGTAAAGGAAAGGCCTAATAGGCTG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1030 <<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1031
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1032 241 TTCCCATAAAAAGAAGCTAC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1033 <<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1034
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1035 > Contig1_chr30_5992217_5993068 106 C T 1.078937
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1036
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1037 1 CTTGAGACAGCCATGGTGTTTGTTTCTACCTTTCCTCTAAGAAGACACCTGTATACAGAT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1038 >>>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1039
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1040 61 ATTCCnTGTGACTCACACTCATCCTCATAGACATCCCCAGTATCATTTCTGTGAAGCCTT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1041 <<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1042
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1043 121 CCTTGACATTTTCCAACA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1044 <<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1045
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1046 > Contig165_chr30_25804389_25804926 190 T C 0.328844
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1047
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1048 1 CCGCTTGTCCCGCTCTGTGATTTAGATGTTTCACGAGCGGGAAGGTGGGGGGATTGATTC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1049 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1050
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1051 61 TCTnATTCGCGCTTCTCCGCCCAGGCTGCGCATTAGAATCACTTGGGGAGCTTTAAAACA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1052 <<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1053
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1054 121 TGCCAG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1055 <<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1056
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1057 > Contig38_chr31_5164423_5166573 2074 C T
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1058
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1059 > Contig17_chr31_26433828_26434459 498 T C 4.814134
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1060
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1061 1 CCATGCAATCTCATGCAATGGTTAAAAGCAATGAATTTGTTGTACTCAAAATACCTTGGT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1062 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1063
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1064 61 TGGGTATTAAAAAGTTTTnAGTAAACATAATGAAAAAAATAGAAGTAGATAAGATCAACA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1065 <<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1066
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1067 121 CACCTACACGAATTA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1068 <<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1069
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1070 > Contig9_chr32_19479532_19479735 12 A G
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1071
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1072 > Contig30_chr32_25902721_25905783 208 C G 0.322381
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1073 AluI,HindIII
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1074 1 TTCACAGTGTTCTCCCAAGGCACAAATAGAATGCTCAGTCATTGGTTATTTTACTTAGAT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1075 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1076
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1077 61 ATTCCTTTCTAAATATAGACTTACCTGTTATTTTTTCCTATACTAATAACATTCAAATTA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1078
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1079
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1080 121 TCTATGTGTACAATAATAAACACTAGGCATAACTGTATCTCAGTACCAATTTCCTTAGAA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1081
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1082
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1083 181 GGTAAAnCTTATTTCAGTCAAGGTCTAGGCCAAGCATTGA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1084 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1085
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1086 > Contig18_chr33_22207246_22209159 1363 G T 2.559961
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1087
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1088 1 ACGACTGCCCTTTTTCCCTCTGTCTCTATTTCTCCTACACACACACACACACACACACAC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1089 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1090
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1091 61 ACACAgAGTGAGCTTTTAGCAACCTTGTTTAACATTTGGAAAGGAATAGCTGACACAACA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1092
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1093
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1094 121 GAGGGGGGnATAAGTAAATACATTGCATGGCTGTATATAATTGAACATTCTTCAAATTCT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1095
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1096
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1097 181 TTAAACAGAAATTTCAGTACCATGGAGATCCTTGAAAT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1098 <<<<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1099
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1100 > Contig170_chr33_26189421_26189940 292 T C 0.307330
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1101
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1102 1 TTCAAGTTCCCCTTTTGTGCCTTCACACACTTGTnTTTATGGTCTCTATTTAAAAAAAAg
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1103 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1104
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1105 61 AGACAAAAACCTCTTAATAAATTTAGGAAGTAGTCCTCACTCTTTAAAGGAATTGTGCTT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1106
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1107
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1108 121 AAAGCAGCAGCTCTTCCTCACTCCTTG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1109 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1110
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1111 > Contig113_chr34_13341080_13341643 236 C T 0.412222
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1112 Hsp92II,NcoI,StyI
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1113 1 AAATGCTCATTTCCCAACATTCAGTGAAATGCCTGATGACTAATCCTTGCTCCaTGGATC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1114 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1115
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1116 61 CTGGGGGTCCCGTGCACAGAAGAGGGTGAGGTCTCTGCCAnGGACTGTGTCCCTGGAAAT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1117 <<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1118
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1119 121 GACAGGGCA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1120 <<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1121
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1122 > Contig152_chr34_31794848_31795540 242 G A 2.779642
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1123
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1124 1 ATAGGAAATAAAACCCCAGCTCTCAGAGnAAAGCAAAATACTTTTAAAAAGATGAAAAAG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1125 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1126
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1127 61 CATCAGAGCTATGAGACACAGAAGATCTAGAGTATAATTGTGTTTTTGTATAGAAGGGAG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1128
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1129
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1130 121 AGAAGGAATGCTGCAGGAGCCACATTTCTCCATCTA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1131 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1132
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1133 > Contig47_chr35_3666773_3667898 348 G T 0.234571
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1134
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1135 1 GCTGCCTCAGCAGTTATCTTGGGTTCTGTTAACTTTGACACACCTTTCACGAAGAAATTC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1136 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1137
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1138 61 TTCATTGCAGTGCTTGAACAATCTGATTGTTCAATCTGATTnGATTCTATTTCTTGCTGA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1139
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1140
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1141 121 GATAATGTTCTAGCACCTTCTCTGTGGATCCCCTTAT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1142 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1143
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1144 > Contig74_chr35_25394343_25394813 303 A T 4.297720
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1145
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1146 1 AGTTTCCCCAAATGTTCATGATTAACCAGGTAAACTGAAGATTAACCTTAAATATATATT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1147 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1148
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1149 61 TCTTTGAGTCATTATAATTAAATTAACTAGGTTGTTTTCAAATATACTAATAATAGAAAC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1150
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1151
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1152 121 TGAAAAAATAATCCAAGTAATATaTCTGAATTGAAAAAAAAAGTAAGGCCATTGTATAAA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1153
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1154
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1155 181 ACAACTGAAAGTTTTTGGAnAAGGTACTATTTTTAATTTACAGTGCATTTTTTTAATCGG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1156
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1157
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1158 241 CATTTCAAATAATAACTTCAATCaCACACACAAAAATAAACCAAATCAACTGCATGTAAG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1159 <<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1160
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1161 301 GGaAGT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1162 <<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1163
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1164 > Contig5_chr36_4562983_4563634 343 C T 1.168507
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1165
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1166 1 ATATGAATGGTGGTGATGGATTCAGCATCTTGACTCTTTTTCAACTATGTCAAGATTTGC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1167 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1168
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1169 61 ACTGGATCTTGTCTAAAGTCACTCTTCTAGGGGAAGTCAAAGAGACTGGGTCaGTCCtCA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1170
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1171
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1172 121 AGATAcGATGTAAGCAGGTAAGATAGCACTATAGTAGGTCTTCTTGTCATGGTGAGTCAA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1173
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1174
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1175 181 TAACCATTCAATATTCTTTCnACCTACTCTTTACCTGCTCAATCAAGGTAGGGGTC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1176 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1177
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1178 > Contig133_chr36_32954045_32955409 136 A G 3.772017
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1179 TaqI
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1180 1 ATTAAATGAAAACAGTGTCAGGCAATAAGATGTATTAAGTACAGTATGCCTGAGGATATA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1181 >>>>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1182
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1183 61 ATATTAAACACAGATTCTGCTGTTACTATCnAAGTGGATATTAAAATAACAGTGCTACTT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1184
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1185
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1186 121 TGAGGGTAATGCTACTTTGGAGAATATTTTCTAATAAGCTCACCaTAAAATGACggATAA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1187 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1188
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1189 > Contig53_chr37_6665763_6665919 116 C T 10.874746
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1190 BstOI
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1191 1 AGTCCTCATGTTGTACTTTACCTCACCTGAATTTACTCATCtGATAGTTGGAAATTTGTA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1192 >>>>>>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1193
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1194 61 TCCATTGCCCATCtTCACCACCCCATGTCnCTGGAAACCAACAAtCTGTTCTCTGTATGa
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1195 <<<<<<<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1196
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1197 121 CTT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1198
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1199
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1200 > Contig2_chr37_31197993_31198256 182 C T 0.594606
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1201
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1202 1 CTCTCACCACATGGAGAATCCTGTATGTTCAGCTGTATGACGTGGGGGGAACGTCAGAGC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1203 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1204
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1205 61 TCAGTTTCATAGCAGTCAGCTCCATGTTATGGGTTCAAgAnGAAAACAGGTGGCAGGCtT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1206
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1207
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1208 121 GCCACAGCCTCCCTCAGGGGTGgCCTTGACAGATAAAcGT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1209 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1210
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1211 > Contig7_chr38_12217200_12218387 1163 A T
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1212
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1213 > Contig265_chrX_2689247_2689484 114 C G 9.232233
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1214
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1215 1 CTTAGAGAATTCCCTGATTCACTGAGTTAAATTATTACCAAATCTGATAATAATAAAAGA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1216 >>>>>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1217
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1218 61 AGTAATTACAGATCAATAATTAATCTATATGTCTGAATACATTTTAATAAGTCCnAcTCA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1219
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1220
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1221 121 ACAATATGCTGACAAAACAATACATCTTGTCT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1222 <<<<<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1223
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1224 > Contig113_chrX_26287829_26288398 385 C T 0.077485
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1225
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1226 1 AAAGCCGTAACAGTCGCTAGGAGAATCATAATTTTAAGCTTTGTGTGTCCCGGGcTTGAG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1227 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1228
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1229 61 TCCCTCAGGAGTAGTTAGATGCGGCCTTAAATTCTCcCAGTAAATTCACnTTGACGGCCT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1230
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1231
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1232 121 ATTTTTGACCTGGGGGCACACGCTGCTATACACTCTAGCCACCTCTGATCCTCTGGCCTC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1233
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1234
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1235 181 CTCTGTTACAATGACAGAAACGACAGAAGCATTTCTTTAAAATAAGTCCCAGTACGTGCA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1236
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1237
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1238 241 CACAAACGTTCAGGGCAGCCTTCTCCATAAACGGCACGAAATGGC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1239 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1240
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1241 > Contig90_chrX_57430715_57431566 548 C T 0.153995
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1242 EcoRV
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1243 1 CTCATTCCCAGCTACCTCCACCTCTATACCAACCCCTAGTTCCTGTACATCCCTGCTTCT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1244 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1245
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1246 61 ATAGGAAATCTTCCTGGTGTTGATATnATTCCCAAGGTCAGGCTGTCCTCCTAGCTCCCT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1247
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1248
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1249 121 CTCCTCATCTGCATCAAGTCCTCCAAACTGGGCAGTAGAC
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1250 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1251
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1252 > Contig133_chrX_84833782_84834125 182 G A 0.277794
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1253
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1254 1 CACCAGAGTGCAATCGAGAACCATCTGATCACAGAACCATAGAAAAGATTGCTGTACAAG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1255 >>>>>>>>>>>>>>>>>>>>
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1256
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1257 61 ACTTAGGAACTCATTCTGTTCAGGATGGAGAAGCTGATGCCCAAAAAGGGAAAGGAACTT
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1258
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1259
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1260 121 AACCAAAGTCCATACAnTATCAACTCTACACATAAAGGAAGGGAGTGGAGGGAGCAGTAA
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1261
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1262
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1263 181 GACCAGAGATATAGACCCCAGTGAGGAGGCTGTGAGCTCCTG
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1264 <<<<<<<<<<<<<<<<<<<<
2c498d40ecde Uploaded
miller-lab
parents:
diff changeset
1265