annotate test-data/test_out/rank_pathways/rank_pathways.tabular @ 14:8ae67e9fb6ff

Uploaded Miller Lab Devshed version a51c894f5bed again [possible toolshed.g2 bug]
author miller-lab
date Fri, 28 Sep 2012 11:35:56 -0400
parents 2c498d40ecde
children
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2c498d40ecde Uploaded
miller-lab
parents:
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1 3 0.25 1 cfa03450=Non-homologous end-joining
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miller-lab
parents:
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2 1 0.25 1 cfa00750=Vitamin B6 metabolism
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miller-lab
parents:
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3 2 0.2 3 cfa00290=Valine, leucine and isoleucine biosynthesis
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miller-lab
parents:
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4 3 0.18 4 cfa00770=Pantothenate and CoA biosynthesis
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miller-lab
parents:
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5 5 0.17 5 cfa05310=Asthma
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miller-lab
parents:
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6 4 0.16 6 cfa00760=Nicotinate and nicotinamide metabolism
2c498d40ecde Uploaded
miller-lab
parents:
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7 2 0.12 7 cfa00450=Selenocompound metabolism
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miller-lab
parents:
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8 4 0.11 8 cfa05330=Allograft rejection
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miller-lab
parents:
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9 5 0.098 9 cfa04672=Intestinal immune network for IgA production
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miller-lab
parents:
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10 4 0.098 9 cfa02010=ABC transporters
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miller-lab
parents:
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11 2 0.095 11 cfa03430=Mismatch repair
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miller-lab
parents:
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12 4 0.089 12 cfa05320=Autoimmune thyroid disease
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miller-lab
parents:
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13 4 0.089 12 cfa00280=Valine, leucine and isoleucine degradation
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miller-lab
parents:
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14 3 0.088 14 cfa03410=Base excision repair
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miller-lab
parents:
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15 3 0.088 14 cfa03030=DNA replication
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miller-lab
parents:
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16 3 0.088 14 cfa00565=Ether lipid metabolism
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miller-lab
parents:
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17 6 0.087 17 cfa05140=Leishmaniasis
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miller-lab
parents:
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18 2 0.087 17 cfa04977=Vitamin digestion and absorption
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miller-lab
parents:
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19 1 0.083 19 cfa00740=Riboflavin metabolism
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miller-lab
parents:
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20 4 0.08 20 cfa05150=Staphylococcus aureus infection
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miller-lab
parents:
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21 2 0.08 20 cfa03060=Protein export
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miller-lab
parents:
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22 3 0.079 22 cfa05340=Primary immunodeficiency
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miller-lab
parents:
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23 3 0.079 22 cfa05143=African trypanosomiasis
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miller-lab
parents:
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24 6 0.078 24 cfa00564=Glycerophospholipid metabolism
2c498d40ecde Uploaded
miller-lab
parents:
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25 2 0.077 25 cfa00410=beta-Alanine metabolism
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miller-lab
parents:
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26 2 0.071 26 cfa05332=Graft-versus-host disease
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miller-lab
parents:
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27 5 0.069 27 cfa03320=PPAR signaling pathway
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miller-lab
parents:
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28 6 0.066 28 cfa05323=Rheumatoid arthritis
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miller-lab
parents:
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29 5 0.063 29 cfa04664=Fc epsilon RI signaling pathway
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miller-lab
parents:
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30 3 0.062 30 cfa00561=Glycerolipid metabolism
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miller-lab
parents:
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31 2 0.062 30 cfa00350=Tyrosine metabolism
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miller-lab
parents:
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32 2 0.062 30 cfa00020=Citrate cycle (TCA cycle)
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miller-lab
parents:
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33 2 0.059 33 cfa00260=Glycine, serine and threonine metabolism
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miller-lab
parents:
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34 1 0.059 33 cfa04614=Renin-angiotensin system
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miller-lab
parents:
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35 1 0.059 33 cfa00360=Phenylalanine metabolism
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miller-lab
parents:
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36 9 0.058 36 cfa04145=Phagosome
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miller-lab
parents:
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37 3 0.058 36 cfa05213=Endometrial cancer
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miller-lab
parents:
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38 4 0.057 38 cfa05416=Viral myocarditis
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miller-lab
parents:
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39 2 0.057 38 cfa00500=Starch and sucrose metabolism
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miller-lab
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40 2 0.056 40 cfa04130=SNARE interactions in vesicular transport
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miller-lab
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41 1 0.056 40 cfa00592=alpha-Linolenic acid metabolism
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miller-lab
parents:
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42 1 0.053 42 cfa04964=Proximal tubule bicarbonate reclamation
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miller-lab
parents:
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43 1 0.053 42 cfa00630=Glyoxylate and dicarboxylate metabolism
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miller-lab
parents:
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44 3 0.052 44 cfa04621=NOD-like receptor signaling pathway
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miller-lab
parents:
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45 2 0.05 45 cfa05219=Bladder cancer
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miller-lab
parents:
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46 2 0.05 45 cfa04940=Type I diabetes mellitus
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miller-lab
parents:
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47 2 0.05 45 cfa00380=Tryptophan metabolism
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miller-lab
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48 2 0.047 48 cfa03420=Nucleotide excision repair
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miller-lab
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49 3 0.045 49 cfa04920=Adipocytokine signaling pathway
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miller-lab
parents:
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50 3 0.045 49 cfa00970=Aminoacyl-tRNA biosynthesis
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miller-lab
parents:
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51 2 0.045 49 cfa00071=Fatty acid metabolism
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miller-lab
parents:
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52 1 0.045 49 cfa00591=Linoleic acid metabolism
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miller-lab
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53 1 0.045 49 cfa00340=Histidine metabolism
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miller-lab
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54 4 0.043 54 cfa04972=Pancreatic secretion
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miller-lab
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55 2 0.043 54 cfa03022=Basal transcription factors
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miller-lab
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56 2 0.043 54 cfa00982=Drug metabolism - cytochrome P450
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miller-lab
parents:
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57 3 0.042 57 cfa05218=Melanoma
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miller-lab
parents:
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58 3 0.042 57 cfa05211=Renal cell carcinoma
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miller-lab
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59 4 0.041 59 cfa05414=Dilated cardiomyopathy
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miller-lab
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60 2 0.04 60 cfa00590=Arachidonic acid metabolism
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miller-lab
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61 1 0.04 60 cfa04320=Dorso-ventral axis formation
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miller-lab
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62 3 0.039 62 cfa04662=B cell receptor signaling pathway
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miller-lab
parents:
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63 2 0.039 62 cfa00310=Lysine degradation
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miller-lab
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64 3 0.038 64 cfa04512=ECM-receptor interaction
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miller-lab
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65 2 0.038 64 cfa05144=Malaria
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miller-lab
parents:
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66 2 0.038 64 cfa00270=Cysteine and methionine metabolism
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miller-lab
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67 1 0.038 64 cfa03440=Homologous recombination
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miller-lab
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68 1 0.038 64 cfa00052=Galactose metabolism
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miller-lab
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69 8 0.037 69 cfa04810=Regulation of actin cytoskeleton
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miller-lab
parents:
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70 4 0.037 69 cfa05146=Amoebiasis
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miller-lab
parents:
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71 4 0.037 69 cfa04666=Fc gamma R-mediated phagocytosis
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miller-lab
parents:
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72 2 0.037 69 cfa05223=Non-small cell lung cancer
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miller-lab
parents:
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73 6 0.036 73 cfa05168=Herpes simplex infection
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miller-lab
parents:
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74 6 0.036 73 cfa05152=Tuberculosis
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miller-lab
parents:
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75 3 0.036 73 cfa04640=Hematopoietic cell lineage
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miller-lab
parents:
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76 7 0.034 76 cfa04510=Focal adhesion
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miller-lab
parents:
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77 3 0.034 76 cfa00240=Pyrimidine metabolism
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miller-lab
parents:
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78 3 0.033 78 cfa03008=Ribosome biogenesis in eukaryotes
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miller-lab
parents:
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79 1 0.033 78 cfa00983=Drug metabolism - other enzymes
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miller-lab
parents:
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80 2 0.032 80 cfa04976=Bile secretion
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miller-lab
parents:
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81 6 0.031 81 cfa04060=Cytokine-cytokine receptor interaction
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miller-lab
parents:
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82 4 0.031 81 cfa04110=Cell cycle
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miller-lab
parents:
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83 1 0.031 81 cfa00250=Alanine, aspartate and glutamate metabolism
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miller-lab
parents:
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84 4 0.029 84 cfa05145=Toxoplasmosis
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miller-lab
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85 3 0.029 84 cfa04650=Natural killer cell mediated cytotoxicity
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miller-lab
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86 2 0.029 84 cfa05214=Glioma
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miller-lab
parents:
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87 4 0.028 87 cfa05162=Measles
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miller-lab
parents:
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88 2 0.028 87 cfa05412=Arrhythmogenic right ventricular cardiomyopathy (ARVC)
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miller-lab
parents:
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89 7 0.027 89 cfa05166=HTLV-I infection
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miller-lab
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90 4 0.027 89 cfa05322=Systemic lupus erythematosus
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miller-lab
parents:
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91 2 0.027 89 cfa05212=Pancreatic cancer
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miller-lab
parents:
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92 2 0.026 92 cfa04146=Peroxisome
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miller-lab
parents:
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93 2 0.026 92 cfa04070=Phosphatidylinositol signaling system
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miller-lab
parents:
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94 1 0.026 92 cfa04978=Mineral absorption
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miller-lab
parents:
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95 2 0.025 95 cfa05133=Pertussis
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miller-lab
parents:
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96 2 0.025 95 cfa04612=Antigen processing and presentation
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miller-lab
parents:
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97 2 0.025 95 cfa04350=TGF-beta signaling pathway
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miller-lab
parents:
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98 1 0.025 95 cfa00830=Retinol metabolism
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miller-lab
parents:
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99 3 0.024 99 cfa04514=Cell adhesion molecules (CAMs)
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miller-lab
parents:
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100 2 0.024 99 cfa05410=Hypertrophic cardiomyopathy (HCM)
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miller-lab
parents:
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101 2 0.024 99 cfa04012=ErbB signaling pathway
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miller-lab
parents:
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102 1 0.024 99 cfa00980=Metabolism of xenobiotics by cytochrome P450
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miller-lab
parents:
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103 1 0.024 99 cfa00640=Propanoate metabolism
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miller-lab
parents:
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104 3 0.023 104 cfa04360=Axon guidance
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miller-lab
parents:
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105 2 0.023 104 cfa04620=Toll-like receptor signaling pathway
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miller-lab
parents:
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106 1 0.023 104 cfa04975=Fat digestion and absorption
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miller-lab
parents:
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107 1 0.023 104 cfa04330=Notch signaling pathway
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miller-lab
parents:
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108 7 0.022 108 cfa05200=Pathways in cancer
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miller-lab
parents:
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109 3 0.022 108 cfa04910=Insulin signaling pathway
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miller-lab
parents:
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110 2 0.022 108 cfa05215=Prostate cancer
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miller-lab
parents:
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111 1 0.022 108 cfa03460=Fanconi anemia pathway
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miller-lab
parents:
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112 24 0.021 112 cfa01100=Metabolic pathways
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miller-lab
parents:
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113 3 0.021 112 cfa04630=Jak-STAT signaling pathway
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miller-lab
parents:
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114 1 0.021 112 cfa00480=Glutathione metabolism
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miller-lab
parents:
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115 3 0.020 115 cfa00230=Purine metabolism
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miller-lab
parents:
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116 2 0.020 115 cfa04540=Gap junction
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miller-lab
parents:
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117 1 0.02 115 cfa00620=Pyruvate metabolism
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miller-lab
parents:
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118 2 0.019 118 cfa04912=GnRH signaling pathway
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miller-lab
parents:
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119 2 0.018 119 cfa05142=Chagas disease (American trypanosomiasis)
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miller-lab
parents:
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120 2 0.018 119 cfa04380=Osteoclast differentiation
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miller-lab
parents:
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121 1 0.018 119 cfa05221=Acute myeloid leukemia
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miller-lab
parents:
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122 1 0.018 119 cfa00330=Arginine and proline metabolism
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miller-lab
parents:
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123 3 0.017 123 cfa05164=Influenza A
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miller-lab
parents:
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124 2 0.017 123 cfa04270=Vascular smooth muscle contraction
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miller-lab
parents:
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125 2 0.017 123 cfa04114=Oocyte meiosis
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miller-lab
parents:
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126 3 0.016 126 cfa04141=Protein processing in endoplasmic reticulum
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miller-lab
parents:
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127 3 0.016 126 cfa04020=Calcium signaling pathway
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miller-lab
parents:
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128 2 0.016 126 cfa05160=Hepatitis C
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miller-lab
parents:
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129 2 0.016 126 cfa04670=Leukocyte transendothelial migration
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miller-lab
parents:
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130 1 0.016 126 cfa05210=Colorectal cancer
2c498d40ecde Uploaded
miller-lab
parents:
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131 1 0.016 126 cfa04610=Complement and coagulation cascades
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miller-lab
parents:
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132 1 0.016 126 cfa04150=mTOR signaling pathway
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miller-lab
parents:
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133 4 0.015 133 cfa04010=MAPK signaling pathway
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miller-lab
parents:
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134 1 0.015 133 cfa04974=Protein digestion and absorption
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miller-lab
parents:
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135 1 0.015 133 cfa04730=Long-term depression
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miller-lab
parents:
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136 1 0.015 133 cfa04115=p53 signaling pathway
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miller-lab
parents:
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137 1 0.014 137 cfa05220=Chronic myeloid leukemia
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miller-lab
parents:
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138 1 0.014 137 cfa04971=Gastric acid secretion
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miller-lab
parents:
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139 1 0.014 137 cfa04720=Long-term potentiation
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miller-lab
parents:
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140 1 0.014 137 cfa04370=VEGF signaling pathway
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miller-lab
parents:
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141 1 0.014 137 cfa04260=Cardiac muscle contraction
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miller-lab
parents:
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142 1 0.014 137 cfa03018=RNA degradation
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miller-lab
parents:
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143 2 0.013 143 cfa00010=Glycolysis / Gluconeogenesis
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miller-lab
parents:
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144 1 0.013 143 cfa04970=Salivary secretion
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miller-lab
parents:
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145 1 0.013 143 cfa04520=Adherens junction
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miller-lab
parents:
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146 2 0.012 146 cfa04062=Chemokine signaling pathway
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miller-lab
parents:
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147 1 0.012 146 cfa05134=Legionellosis
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miller-lab
parents:
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148 1 0.012 146 cfa05132=Salmonella infection
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miller-lab
parents:
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149 1 0.012 146 cfa04727=GABAergic synapse
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miller-lab
parents:
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150 1 0.012 146 cfa04210=Apoptosis
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miller-lab
parents:
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151 1 0.011 151 cfa03015=mRNA surveillance pathway
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miller-lab
parents:
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152 1 0.010 152 cfa04914=Progesterone-mediated oocyte maturation
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miller-lab
parents:
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153 1 0.0098 153 cfa04916=Melanogenesis
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miller-lab
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154 2 0.0095 154 cfa04144=Endocytosis
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miller-lab
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155 1 0.0087 155 cfa04142=Lysosome
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miller-lab
parents:
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156 1 0.0086 156 cfa04660=T cell receptor signaling pathway
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miller-lab
parents:
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157 1 0.0082 157 cfa04724=Glutamatergic synapse
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miller-lab
parents:
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158 2 0.0081 158 cfa04080=Neuroactive ligand-receptor interaction
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miller-lab
parents:
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159 1 0.0079 159 cfa04728=Dopaminergic synapse
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miller-lab
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160 2 0.0074 160 cfa05010=Alzheimer's disease
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miller-lab
parents:
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161 1 0.0074 160 cfa04722=Neurotrophin signaling pathway
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miller-lab
parents:
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162 1 0.0074 160 cfa04120=Ubiquitin mediated proteolysis
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miller-lab
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163 1 0.0068 163 cfa00190=Oxidative phosphorylation
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miller-lab
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164 1 0.0067 164 cfa05012=Parkinson's disease
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miller-lab
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165 1 0.0057 165 cfa03013=RNA transport
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miller-lab
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166 1 0.0056 166 cfa03040=Spliceosome
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miller-lab
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167 1 0.0049 167 cfa05016=Huntington's disease
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miller-lab
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168 1 0.0023 168 cfa04740=Olfactory transduction
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miller-lab
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169 0 0 169 cfa05222=Small cell lung cancer
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miller-lab
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170 0 0 169 cfa05217=Basal cell carcinoma
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miller-lab
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171 0 0 169 cfa05216=Thyroid cancer
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miller-lab
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172 0 0 169 cfa05100=Bacterial invasion of epithelial cells
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miller-lab
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173 0 0 169 cfa05020=Prion diseases
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miller-lab
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174 0 0 169 cfa05014=Amyotrophic lateral sclerosis (ALS)
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miller-lab
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175 0 0 169 cfa04973=Carbohydrate digestion and absorption
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miller-lab
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176 0 0 169 cfa04966=Collecting duct acid secretion
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miller-lab
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177 0 0 169 cfa04962=Vasopressin-regulated water reabsorption
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miller-lab
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178 0 0 169 cfa04961=Endocrine and other factor-regulated calcium reabsorption
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miller-lab
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179 0 0 169 cfa04960=Aldosterone-regulated sodium reabsorption
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miller-lab
parents:
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180 0 0 169 cfa04950=Maturity onset diabetes of the young
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miller-lab
parents:
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181 0 0 169 cfa04930=Type II diabetes mellitus
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miller-lab
parents:
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182 0 0 169 cfa04744=Phototransduction
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miller-lab
parents:
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183 0 0 169 cfa04742=Taste transduction
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miller-lab
parents:
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184 0 0 169 cfa04725=Cholinergic synapse
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miller-lab
parents:
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185 0 0 169 cfa04721=Synaptic vesicle cycle
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miller-lab
parents:
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186 0 0 169 cfa04710=Circadian rhythm - mammal
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miller-lab
parents:
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187 0 0 169 cfa04623=Cytosolic DNA-sensing pathway
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miller-lab
parents:
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188 0 0 169 cfa04622=RIG-I-like receptor signaling pathway
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miller-lab
parents:
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189 0 0 169 cfa04530=Tight junction
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miller-lab
parents:
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190 0 0 169 cfa04340=Hedgehog signaling pathway
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miller-lab
parents:
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191 0 0 169 cfa04310=Wnt signaling pathway
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miller-lab
parents:
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192 0 0 169 cfa04140=Regulation of autophagy
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miller-lab
parents:
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193 0 0 169 cfa04122=Sulfur relay system
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miller-lab
parents:
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194 0 0 169 cfa03050=Proteasome
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miller-lab
parents:
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195 0 0 169 cfa03020=RNA polymerase
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miller-lab
parents:
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196 0 0 169 cfa03010=Ribosome
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miller-lab
parents:
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197 0 0 169 cfa01040=Biosynthesis of unsaturated fatty acids
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miller-lab
parents:
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198 0 0 169 cfa00920=Sulfur metabolism
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miller-lab
parents:
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199 0 0 169 cfa00910=Nitrogen metabolism
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miller-lab
parents:
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200 0 0 169 cfa00900=Terpenoid backbone biosynthesis
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miller-lab
parents:
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201 0 0 169 cfa00860=Porphyrin and chlorophyll metabolism
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miller-lab
parents:
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202 0 0 169 cfa00790=Folate biosynthesis
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miller-lab
parents:
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203 0 0 169 cfa00785=Lipoic acid metabolism
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miller-lab
parents:
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204 0 0 169 cfa00780=Biotin metabolism
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miller-lab
parents:
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205 0 0 169 cfa00730=Thiamine metabolism
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miller-lab
parents:
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206 0 0 169 cfa00670=One carbon pool by folate
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miller-lab
parents:
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207 0 0 169 cfa00650=Butanoate metabolism
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miller-lab
parents:
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208 0 0 169 cfa00604=Glycosphingolipid biosynthesis - ganglio series
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miller-lab
parents:
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209 0 0 169 cfa00603=Glycosphingolipid biosynthesis - globo series
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miller-lab
parents:
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210 0 0 169 cfa00601=Glycosphingolipid biosynthesis - lacto and neolacto series
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miller-lab
parents:
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211 0 0 169 cfa00600=Sphingolipid metabolism
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miller-lab
parents:
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212 0 0 169 cfa00563=Glycosylphosphatidylinositol(GPI)-anchor biosynthesis
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miller-lab
parents:
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213 0 0 169 cfa00562=Inositol phosphate metabolism
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miller-lab
parents:
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214 0 0 169 cfa00534=Glycosaminoglycan biosynthesis - heparan sulfate
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miller-lab
parents:
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215 0 0 169 cfa00533=Glycosaminoglycan biosynthesis - keratan sulfate
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miller-lab
parents:
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216 0 0 169 cfa00532=Glycosaminoglycan biosynthesis - chondroitin sulfate
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miller-lab
parents:
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217 0 0 169 cfa00531=Glycosaminoglycan degradation
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miller-lab
parents:
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218 0 0 169 cfa00520=Amino sugar and nucleotide sugar metabolism
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miller-lab
parents:
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219 0 0 169 cfa00514=Other types of O-glycan biosynthesis
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miller-lab
parents:
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220 0 0 169 cfa00512=Mucin type O-Glycan biosynthesis
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miller-lab
parents:
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221 0 0 169 cfa00511=Other glycan degradation
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miller-lab
parents:
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222 0 0 169 cfa00510=N-Glycan biosynthesis
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miller-lab
parents:
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223 0 0 169 cfa00472=D-Arginine and D-ornithine metabolism
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miller-lab
parents:
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224 0 0 169 cfa00471=D-Glutamine and D-glutamate metabolism
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miller-lab
parents:
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225 0 0 169 cfa00460=Cyanoamino acid metabolism
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miller-lab
parents:
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226 0 0 169 cfa00430=Taurine and hypotaurine metabolism
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miller-lab
parents:
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227 0 0 169 cfa00400=Phenylalanine, tyrosine and tryptophan biosynthesis
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miller-lab
parents:
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228 0 0 169 cfa00300=Lysine biosynthesis
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miller-lab
parents:
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229 0 0 169 cfa00232=Caffeine metabolism
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miller-lab
parents:
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230 0 0 169 cfa00140=Steroid hormone biosynthesis
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miller-lab
parents:
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231 0 0 169 cfa00130=Ubiquinone and other terpenoid-quinone biosynthesis
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miller-lab
parents:
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232 0 0 169 cfa00120=Primary bile acid biosynthesis
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miller-lab
parents:
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233 0 0 169 cfa00100=Steroid biosynthesis
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miller-lab
parents:
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234 0 0 169 cfa00072=Synthesis and degradation of ketone bodies
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miller-lab
parents:
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235 0 0 169 cfa00062=Fatty acid elongation in mitochondria
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miller-lab
parents:
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236 0 0 169 cfa00061=Fatty acid biosynthesis
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miller-lab
parents:
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237 0 0 169 cfa00053=Ascorbate and aldarate metabolism
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miller-lab
parents:
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238 0 0 169 cfa00051=Fructose and mannose metabolism
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miller-lab
parents:
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239 0 0 169 cfa00040=Pentose and glucuronate interconversions
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miller-lab
parents:
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240 0 0 169 cfa00030=Pentose phosphate pathway