Mercurial > repos > miller-lab > genome_diversity
annotate README @ 7:e29f4d801bb0
change wsf -> snp; wpf -> sap
| author | Richard Burhans <burhans@bx.psu.edu> |
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| date | Wed, 18 Apr 2012 11:12:21 -0400 |
| parents | 626b714f72bb |
| children |
| rev | line source |
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| 0 | 1 Source code for the executables needed by these tools can be found in |
| 2 the genome_diversity directory. | |
| 3 | |
| 4 Additionally, you'll need the following python modules: | |
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5 matplotlib (we used version 1.1.0) http://pypi.python.org/packages/source/m/matplotlib/ |
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6 mechanize (we used version 0.2.5) http://pypi.python.org/packages/source/m/mechanize/ |
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7 networkx (we used version 1.6) http://pypi.python.org/packages/source/n/networkx/ |
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8 |
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9 And the following software: |
| 6 | 10 ADMIXTURE (we used version 1.22) http://www.genetics.ucla.edu/software/admixture/ |
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11 EIGENSOFT (we used version 3.0) http://genepath.med.harvard.edu/~reich/Software.htm |
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12 PHAST (we used version 1.2.1) http://compgen.bscb.cornell.edu/phast/ |
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13 QuickTree (we used version 1.1) http://www.sanger.ac.uk/resources/software/quicktree/ |