Mercurial > repos > miller-lab > genome_diversity
annotate evaluate_population_numbers.bash @ 7:e29f4d801bb0
change wsf -> snp; wpf -> sap
| author | Richard Burhans <burhans@bx.psu.edu> |
|---|---|
| date | Wed, 18 Apr 2012 11:12:21 -0400 |
| parents | 2c498d40ecde |
| children |
| rev | line source |
|---|---|
| 0 | 1 #!/usr/bin/env bash |
| 2 | |
| 3 if [ $# -ne 3 ]; then | |
| 4 echo "usage" | |
| 5 exit 1 | |
| 6 fi | |
| 7 | |
| 8 input_ped_file="$1" | |
| 9 output_file="$2" | |
| 10 max_populations="$3" | |
| 11 | |
| 12 ADMIXTURE=admixture | |
| 13 | |
| 14 for (( i=1; $i <= $max_populations; i++ )); do | |
| 15 $ADMIXTURE --cv "$input_ped_file" $i 2>&1 | grep CV >> "$output_file" | |
| 16 done | |
| 17 |