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annotate test-data/test_out/modify_snp_table/modify.gd_snp @ 39:e56023008e36 default tip

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Changed revision of package_fisher_0_1_4 to be2fc454d121 Changed revision of package_matplotlib_1_2 to a03ee94316b5
author miller-lab
date Mon, 06 Jul 2015 10:32:24 -0400
parents d4ec09e8079f
children
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1 Contig161_chr1_4641264_4641879 115 C T 73.5 chr1 4641382 C 6 0 2 45 8 0 2 51 15 0 2 72 5 0 2 42 6 0 2 45 10 0 2 57 Y 54 0.323 0
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2 Contig20_chr1_21313469_21313570 66 C T 54.0 chr1 21313534 C 4 0 2 39 4 0 2 39 5 0 2 42 4 0 2 39 4 0 2 39 5 0 2 42 N 1 +99. 0
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3 Contig86_chr1_30984450_30985684 670 C T 365.0 chr1 30985133 C 9 0 2 54 10 0 2 57 13 0 2 66 3 0 2 36 9 0 2 54 7 0 2 48 Y 145 0.031 0
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4 Contig5_chr1_32562160_32563940 1215 G T 163.0 chr1 32563356 G 17 0 2 78 19 0 2 84 20 0 2 87 14 0 2 69 12 0 2 63 10 0 2 57 Y 17 0.251 0
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5 Contig110_chr1_33385093_33386888 510 C T 270.0 chr1 33385587 A 14 0 2 69 11 0 2 60 19 0 2 84 11 0 2 60 10 0 2 57 13 0 2 66 Y 13 0.126 0
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6 Contig100_chr1_33562920_33564288 743 C T 178.0 chr1 33563655 C 6 0 2 45 10 0 2 57 8 0 2 51 5 0 2 42 13 0 2 66 7 0 2 48 Y 13 0.090 3
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7 Contig7_chr1_37302355_37302489 97 A G 59.2 chr1 37302452 G 3 0 2 36 8 0 2 51 5 0 2 42 8 0 2 51 7 0 2 48 6 0 2 45 N 56 2.812 0
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8 Contig62_chr1_41880715_41882180 1078 T G 57.6 chr1 41881785 T 14 0 2 69 15 0 2 72 16 0 2 75 13 0 2 66 8 0 2 51 10 0 2 57 Y 21 0.477 0
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9 Contig47_chr1_48409178_48409384 37 C T 134.0 chr1 48409215 T 5 0 2 42 6 0 2 45 8 0 2 51 9 0 2 54 4 0 2 39 6 0 2 45 N 66 +99. 0
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10 Contig119_chr1_49647683_49650077 1618 C A 99.7 chr1 49649276 A 8 0 2 51 11 0 2 60 10 0 2 57 9 0 2 54 10 0 2 57 14 0 2 69 Y 16 0.166 0
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11 Contig21_chr1_60697952_60699446 307 G A 51.9 chr1 60698265 G 12 0 2 63 9 0 2 54 4 0 2 39 6 0 2 45 9 0 2 54 4 0 2 39 Y 98 0.507 0
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12 Contig131_chr1_62319542_62320564 169 C G 103.0 chr1 62319709 C 12 0 2 63 12 0 2 66 14 0 2 69 12 0 2 63 9 0 2 54 9 0 2 54 Y 73 0.307 1
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13 Contig14_chr1_63450425_63450680 101 T A 102.0 chr1 63450530 T 8 0 2 51 10 0 2 57 18 0 2 81 8 0 2 51 8 0 2 34 8 0 2 51 N 99 1.085 0
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14 Contig83_chr1_63869778_63869942 40 T C 23.7 chr1 63869819 C 5 0 2 42 7 0 2 48 2 0 2 33 4 0 2 39 6 0 2 48 4 0 2 39 N 654 1.364 0
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15 Contig30_chr1_64702572_64703138 178 A T 117.0 chr1 64702750 T 10 0 2 57 10 0 2 57 20 0 2 87 21 0 2 90 6 0 2 45 12 0 2 63 Y 50 3.872 0
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16 Contig101_chr1_69868406_69868872 287 G A 14.6 chr1 69868689 G 13 0 2 66 17 0 2 78 10 0 2 57 8 0 2 51 7 0 2 48 8 0 2 51 N 137 0.305 0
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17 Contig35_chr1_74482577_74482791 170 G A 45.4 chr1 74482751 A 3 0 2 36 4 0 2 39 13 0 2 66 2 0 2 33 5 0 2 42 2 0 2 33 N 20 +99. 3
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18 Contig49_chr1_83865731_83865944 85 G A 34.1 chr1 -1 N 4 0 2 39 4 0 2 39 8 0 2 51 2 0 2 33 5 0 2 42 4 0 2 39 N -1 1.485 0
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19 Contig129_chr1_117547123_117548666 926 G A 126.0 chr1 117548059 G 19 0 2 84 9 0 2 54 11 0 2 60 10 0 2 57 12 0 2 63 11 0 2 60 Y 64 0.049 0
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20 Contig7_chr1_125154638_125154844 190 G T 130.0 chr1 125154818 A 5 0 2 42 4 0 2 39 7 0 2 48 2 0 2 33 7 0 2 48 4 0 2 39 N 33 +99. 0
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21 Contig222_chr2_9817738_9818143 220 C T 888.0 chr2 9817960 C 17 0 2 78 12 0 2 63 20 0 2 87 8 0 2 51 11 0 2 60 12 0 2 63 Y 76 0.093 1
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22 Contig47_chr2_25470778_25471576 126 G A 888.0 chr2 25470896 G 12 0 2 63 14 0 2 69 14 0 2 69 10 0 2 57 18 0 2 81 13 0 2 66 N 11 0.289 1
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23 Contig10_chr2_40859744_40860534 637 G A 888.0 chr2 40860397 A 3 0 2 36 3 0 2 36 2 0 2 33 7 0 2 48 6 0 2 45 8 0 2 51 Y 42 1.435 0
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24 Contig52_chr2_41421981_41422725 604 C A 888.0 chr2 41422583 A 17 0 2 78 18 0 2 81 14 0 2 69 17 0 2 78 12 0 2 63 14 0 2 69 Y 44 0.882 0
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25 Contig94_chr2_43869105_43870358 220 G A 888.0 chr2 43869333 G 12 0 2 63 18 0 2 81 11 0 2 60 15 0 2 72 12 0 2 63 13 0 2 66 Y 1 0.156 0
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26 Contig34_chr2_48444129_48444939 695 C T 134.0 chr2 48444828 C 14 0 2 69 8 0 2 51 16 0 2 75 17 0 2 78 9 0 2 54 15 0 2 72 Y 161 0.375 0
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27 Contig6_chr2_56859179_56859956 671 T C 999.9 chr2 56859851 T 15 0 2 72 18 0 2 81 20 0 2 90 19 0 2 84 19 0 2 84 24 0 2 99 N 28 5.308 1
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28 Contig115_chr2_61631913_61632510 310 G T 999.3 chr2 61632216 G 7 0 2 48 9 0 2 54 7 0 2 48 11 0 2 60 10 0 2 57 10 0 2 57 N 13 0.184 0
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29 Contig31_chr2_67331584_67331785 39 C T 999.0 chr2 67331623 C 11 0 2 60 10 0 2 57 7 0 2 48 9 0 2 54 2 0 2 33 4 0 2 39 N 110 0.647 1
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30 Contig92_chr2_75906683_75907774 773 T C 85.4 chr2 75907438 C 12 0 2 63 12 0 2 63 17 0 2 78 8 0 2 51 8 0 2 51 13 0 2 66 Y 93 0.166 0
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31 Contig163_chr2_76402959_76404830 221 C T 127.0 chr2 76403181 C 4 0 2 42 10 0 2 57 9 0 2 54 11 0 2 60 7 0 2 48 9 0 2 54 Y 54 0.178 1
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32 Contig59_chr2_85243022_85243758 506 G A 96.3 chr2 85243509 T 9 0 2 54 11 0 2 60 12 0 2 63 14 0 2 69 10 0 2 57 7 0 2 48 Y 6 0.459 0
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33 Contig56_chr3_17326225_17327548 387 G C 91.2 chr3 17326591 G 14 0 2 69 13 0 2 66 15 0 2 72 15 0 2 72 13 0 2 66 12 0 2 63 Y 20 0.225 3
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34 Contig108_chr3_46210055_46210874 367 A G 21.0 chr3 46210423 A 19 0 2 84 10 0 2 57 16 0 2 75 14 0 2 69 20 0 2 87 11 0 2 60 N 236 0.028 1
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35 Contig16_chr3_47113407_47114449 322 G A 105.0 chr3 47113713 G 13 0 2 66 17 0 2 78 15 0 2 72 6 0 2 45 11 0 2 60 11 0 2 60 Y 114 0.132 5
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36 Contig3_chr3_47564810_47565251 262 T G 112.0 chr3 47565104 T 14 0 2 69 16 0 2 75 20 0 2 87 10 0 2 57 9 0 2 54 8 0 2 51 Y 24 0.073 1
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37 Contig35_chr3_49662401_49662929 270 A T 96.1 chr3 49662652 A 14 0 2 69 11 0 2 60 23 0 2 96 13 0 2 66 12 0 2 63 11 0 2 60 Y 36 3.583 2
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38 Contig97_chr3_49820354_49821631 1069 G A 44.1 chr3 49821402 G 9 0 2 54 9 0 2 54 6 0 2 45 10 0 2 57 5 0 2 42 8 0 2 51 N 6 0.201 2
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39 Contig25_chr3_53260697_53262560 402 G A 211.0 chr3 53261095 G 17 0 2 78 14 0 2 69 15 0 2 75 12 0 2 63 14 0 2 69 12 0 2 63 Y 116 1.033 0
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40 Contig11_chr3_53992739_53995954 2392 G A 82.4 chr3 53995143 A 12 0 2 66 11 0 2 60 14 0 2 69 6 0 2 45 11 0 2 60 17 0 2 78 Y 358 0.321 1
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41 Contig236_chr3_72676275_72676473 128 G A 278.0 chr3 72676410 G 12 0 2 63 11 0 2 60 13 0 2 66 10 0 2 57 11 0 2 60 8 0 2 51 N 36 0.496 1
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42 Contig48_chr3_74792236_74792388 63 T C 111.0 chr3 74792289 - 17 0 2 78 9 0 2 54 9 0 2 54 5 0 2 42 11 0 2 60 9 0 2 54 N -1 3.528 0
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43 Contig65_chr3_80727952_80728283 39 T C 71.2 chr3 80727990 T 7 0 2 48 3 0 2 36 8 0 2 51 6 0 2 45 8 0 2 51 11 0 2 60 N 22 7.078 0
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44 Contig53_chr3_86407941_86409349 1406 G A 86.9 chr3 86409317 A 5 0 2 42 5 0 2 42 4 0 2 39 10 0 2 57 8 0 2 51 12 0 2 63 N 14 3.285 1
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45 Contig13_chr3_92409738_92412300 718 A G 23.3 chr3 92410450 A 12 0 2 63 16 0 2 75 18 0 2 81 13 0 2 66 22 0 2 93 7 0 2 48 Y 23 0.224 2
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46 Contig134_chr4_12145648_12148225 1326 C T 164.0 chr4 12146961 C 9 0 2 54 8 0 2 51 7 0 2 48 3 0 2 36 5 0 2 42 5 0 2 42 Y 4 0.080 1
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47 Contig88_chr4_15557471_15557833 268 A G 145.0 chr4 15557737 A 6 0 2 45 6 0 2 45 11 0 2 60 9 0 2 54 5 0 2 42 6 0 2 45 Y 46 4.138 0
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48 Contig53_chr4_18823968_18824478 149 A G 91.3 chr4 18824115 A 18 0 2 81 15 0 2 72 21 0 2 90 13 0 2 66 9 0 2 54 12 0 2 63 N 51 0.251 0
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49 Contig19_chr4_26233601_26233991 146 G C 51.6 chr4 26233744 G 10 0 2 57 8 0 2 51 9 0 2 54 5 0 2 42 9 0 2 54 4 0 2 39 N 41 0.163 3
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50 Contig78_chr4_28579975_28580134 30 T G 19.6 chr4 28579994 - 4 0 2 39 3 0 2 36 5 0 2 42 4 0 2 39 2 0 2 33 2 0 2 33 N 33 0.499 0
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51 Contig16_chr4_30177226_30179725 621 C T 88.4 chr4 30177859 C 20 0 2 87 13 0 2 66 13 0 2 66 11 0 2 60 8 0 2 51 8 0 2 51 Y 45 0.797 1
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52 Contig30_chr4_46196500_46197672 1045 A C 33.4 chr4 46197522 C 16 0 2 75 9 0 2 54 4 0 2 39 7 0 2 48 14 0 2 69 6 0 2 45 Y 43 0.306 0
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53 Contig2_chr4_47039007_47039323 158 G C 35.1 chr4 47039160 - 8 0 2 51 9 0 2 54 13 0 2 66 8 0 2 51 10 0 2 60 9 0 2 54 N 0 0.131 0
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54 Contig17_chr4_61310346_61311158 267 C T 49.9 chr4 61310604 T 10 0 2 57 7 0 2 48 9 0 2 54 10 0 2 57 14 0 2 69 7 0 2 48 Y 219 0.098 0
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55 Contig26_chr4_64190783_64191295 64 A G 162.0 chr4 64190843 A 10 0 2 57 6 0 2 45 20 0 2 87 12 0 2 63 17 0 2 78 7 0 2 48 Y 306 7.428 0
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56 Contig11_chr4_65500960_65501654 634 T C 107.0 chr4 65501585 T 13 0 2 66 14 0 2 69 13 0 2 66 13 0 2 66 6 0 2 45 18 0 2 81 Y 10 6.849 0
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57 Contig38_chr4_67768488_67768982 113 A G 102.0 chr4 67768598 A 9 0 2 54 8 0 2 51 9 0 2 54 11 0 2 60 10 0 2 57 7 0 2 48 Y 188 3.175 0
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58 Contig30_chr4_70978564_70979580 596 A G 164.0 chr4 70979151 A 15 0 2 72 12 0 2 63 20 0 2 87 14 0 2 69 15 0 2 72 15 0 2 72 Y 111 2.458 2
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59 Contig72_chr4_74225793_74226492 674 A G 110.0 chr4 74226472 A 5 0 2 42 3 0 2 36 2 0 2 33 3 0 2 36 7 0 2 48 4 0 2 39 Y 115 +99. 1
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60 Contig32_chr4_75618955_75620254 301 T C 333.0 chr4 75619257 C 10 0 2 57 8 0 2 51 12 0 2 63 20 0 2 87 12 0 2 63 14 0 2 69 Y 34 0.163 2
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61 Contig31_chr5_4734956_4736547 1166 C T 133.0 chr5 4736132 C 14 0 2 69 8 0 2 51 17 0 2 78 4 0 2 39 9 0 2 54 12 0 2 63 Y 1 0.021 0
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62 Contig30_chr5_15698241_15699076 396 G T 76.6 chr5 15698633 T 8 0 2 51 9 0 2 54 10 0 2 57 7 0 2 48 11 0 2 60 8 0 2 54 Y 65 0.009 0
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63 Contig36_chr5_17709244_17710004 373 T C 281.0 chr5 17709624 T 6 0 2 45 9 0 2 54 7 0 2 48 4 0 2 39 10 0 2 57 4 0 2 39 Y 16 0.131 0
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64 Contig13_chr5_21881138_21881562 227 A G 251.0 chr5 21881356 A 11 0 2 60 20 0 2 87 22 0 2 93 10 0 2 57 10 0 2 57 21 0 2 90 Y 182 2.013 0
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65 Contig5_chr5_23188121_23190168 1841 C T 141.0 chr5 23189975 C 20 0 2 87 19 0 2 84 22 0 2 93 16 0 2 75 18 0 2 81 14 0 2 69 N 45 0.355 0
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66 Contig6_chr5_26899813_26900498 97 A C 88.6 chr5 26899910 A 15 0 2 72 14 0 2 69 27 0 2 108 15 0 2 72 13 0 2 69 12 0 2 63 Y 92 7.370 3
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67 Contig314_chr5_34019166_34019319 72 C A 20.1 chr5 -1 N 6 0 2 45 9 0 2 54 4 0 2 39 4 0 2 39 9 0 2 54 5 0 2 42 N -1 +99. 4
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68 Contig147_chr5_38980258_38980559 221 C T 40.8 chr5 38980477 C 15 0 2 72 15 0 2 72 19 0 2 84 10 0 2 57 12 0 2 63 20 0 2 87 Y 11 4.576 0
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69 Contig115_chr5_48119079_48120169 151 C T 78.3 chr5 48119234 C 17 0 2 78 10 0 2 57 14 0 2 69 16 0 2 75 8 0 2 51 12 0 2 63 Y 205 0.320 0
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70 Contig45_chr5_50892738_50892968 169 C A 25.8 chr5 50892911 C 10 0 2 57 7 0 2 48 10 0 2 60 6 0 2 45 6 0 2 45 13 0 2 66 N 244 0.497 1
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71 Contig40_chr5_51484164_51484696 14 A G 53.3 chr5 51484180 A 6 0 2 45 4 0 2 39 4 0 2 39 3 0 2 36 0 0 2 13 3 0 2 36 N 63 +99. 1
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72 Contig40_chr5_51664286_51667573 861 C T 148.0 chr5 51665149 C 20 0 2 87 21 0 2 90 20 0 2 87 11 0 2 60 16 0 2 75 15 0 2 72 Y 207 0.080 1
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73 Contig15_chr5_51889708_51891244 882 A G 149.0 chr5 51890581 G 13 0 2 66 18 0 2 81 17 0 2 78 22 0 2 93 15 0 2 72 22 0 2 93 Y 7 0.025 1
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74 Contig143_chr5_57231364_57232010 294 T C 78.5 chr5 57231644 T 3 0 2 36 5 0 2 42 4 0 2 39 2 0 2 33 10 0 2 57 6 0 2 45 Y 73 0.337 2
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75 Contig13_chr5_57609985_57610584 496 C T 50.5 chr5 57610476 C 17 0 2 78 9 0 2 54 6 0 2 45 8 0 2 51 10 0 2 57 12 0 2 63 N 77 2.022 1
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76 Contig230_chr5_58486998_58487280 227 T C 192.0 chr5 58487232 T 3 0 2 36 4 0 2 39 9 0 2 54 6 0 2 45 4 0 2 39 7 0 2 48 N 24 0.100 2
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77 Contig32_chr5_70852360_70853289 282 G A 114.0 chr5 70852623 G 16 0 2 75 11 0 2 60 13 0 2 66 12 0 2 63 13 0 2 66 7 0 2 48 Y 33 0.276 0
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78 Contig100_chr5_71189678_71190590 813 C T 30.8 chr5 71190523 C 11 0 2 60 11 0 2 60 9 0 2 54 10 0 2 57 6 0 2 45 13 0 2 66 Y 8 0.362 1
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79 Contig45_chr5_76133561_76134403 388 A G 103.0 chr5 76133941 G 3 0 2 36 8 0 2 51 8 0 2 51 5 0 2 42 6 0 2 45 7 0 2 48 Y 57 0.038 0
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80 Contig61_chr5_90202541_90204393 909 C T 101.0 chr5 90203461 T 7 0 2 48 5 0 2 42 14 0 2 69 3 0 2 36 5 0 2 42 8 0 2 51 Y 64 1.448 0
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81 Contig111_chr6_5821219_5822519 1060 A G 68.1 chr6 5822321 T 7 0 2 48 6 0 2 45 11 0 2 60 9 0 2 54 3 0 2 36 12 0 2 63 Y 7 0.231 1
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82 Contig220_chr6_10671338_10672441 999 T C 36.3 chr6 10672322 T 5 0 2 42 11 0 2 60 11 0 2 60 8 0 2 51 5 0 2 42 9 0 2 54 Y 1 1.667 0
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83 Contig226_chr6_17361986_17362884 418 G C 251.0 chr6 17362406 G 6 0 2 45 8 0 2 51 7 0 2 48 9 0 2 54 7 0 2 48 7 0 2 48 Y 7 0.147 0
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84 Contig51_chr6_20231207_20231785 161 A G 70.5 chr6 20231375 G 13 0 2 66 5 0 2 42 8 0 2 51 2 0 2 36 5 0 2 42 5 0 2 42 Y 153 1.754 0
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85 Contig102_chr6_30271329_30271577 39 T G 139.0 chr6 30271371 G 3 0 2 36 4 0 2 39 6 0 2 45 1 0 2 30 4 0 2 39 4 0 2 39 N 15 1.159 0
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86 Contig217_chr6_31393824_31394218 97 G A 115.0 chr6 31393921 G 9 0 2 54 19 0 2 84 15 0 2 72 12 0 2 63 7 0 2 48 10 0 2 57 N 45 0.477 0
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87 Contig186_chr6_31928098_31928245 73 G A 117.0 chr6 -1 N 5 0 2 42 8 0 2 51 2 0 2 33 4 0 2 39 1 0 2 30 5 0 2 42 N -1 0.276 1
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88 Contig52_chr6_33188498_33188724 123 G A 59.0 chr6 -1 N 5 0 2 42 13 0 2 66 8 0 2 51 4 0 2 39 9 0 2 54 9 0 2 54 N -1 0.880 1
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89 Contig102_chr6_38743009_38743435 290 A G 178.0 chr6 38743311 A 11 0 2 60 13 0 2 66 9 0 2 54 11 0 2 60 12 0 2 63 13 0 2 66 Y 34 0.148 4
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90 Contig81_chr6_49018353_49019532 179 C A 72.5 chr6 49018530 A 15 0 2 72 13 0 2 66 19 0 2 72 8 0 2 51 12 0 2 63 16 0 2 75 Y 15 0.145 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
91 Contig112_chr6_51024554_51024851 100 A G 121.0 chr6 51024654 A 10 0 2 57 12 0 2 63 9 0 2 54 13 0 2 66 14 0 2 69 17 0 2 78 N 75 4.287 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
92 Contig40_chr6_51412751_51413807 227 T C 94.5 chr6 51412975 C 5 0 2 42 8 0 2 51 7 0 2 48 9 0 2 54 11 0 2 60 10 0 2 57 Y 4 5.661 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
93 Contig47_chr6_69073222_69074767 1315 T C 212.0 chr6 69074558 T 20 0 2 87 17 0 2 78 18 0 2 81 12 0 2 63 17 0 2 78 7 0 2 48 Y 9 0.652 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
94 Contig30_chr6_74848932_74849059 57 C G 46.3 chr6 74848993 C 7 0 2 48 7 0 2 33 6 0 2 45 7 0 2 48 5 0 2 42 6 0 2 45 N -1 +99. 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
95 Contig84_chr7_6648683_6650255 1297 G A 110.0 chr7 6649988 G 18 0 2 81 9 0 2 54 22 0 2 77 16 0 2 75 20 0 2 87 6 0 2 45 Y 83 0.166 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
96 Contig239_chr7_13007379_13007700 275 A G 39.8 chr7 13007642 A 8 0 2 51 5 0 2 42 8 0 2 51 3 0 2 36 3 0 2 36 5 0 2 42 N 46 1.511 3
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
97 Contig119_chr7_18310707_18310948 23 A T 133.0 chr7 18310729 A 6 0 2 45 5 0 2 42 10 0 2 57 5 0 2 42 2 0 2 33 2 0 2 33 N 4553 +99. 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
98 Contig93_chr7_18513377_18513741 173 T C 130.0 chr7 18513533 C 15 0 2 72 11 0 2 60 18 0 2 81 6 0 2 45 10 0 2 57 14 0 2 69 Y 115 0.174 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
99 Contig133_chr7_19603333_19603776 414 C G 31.9 chr7 19603734 G 10 0 2 57 4 0 2 39 4 0 2 39 5 0 2 42 9 0 2 54 9 0 2 54 N 78 +99. 5
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
100 Contig132_chr7_20426224_20428145 1815 A G 28.3 chr7 20428041 A 11 1 2 43 12 0 2 63 19 0 2 84 23 0 2 96 14 0 2 69 10 0 2 57 N 11 0.264 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
101 Contig206_chr7_26281823_26282074 103 C A 101.0 chr7 26281925 T 11 0 2 60 16 0 2 61 19 0 2 84 6 0 2 45 19 0 2 84 16 0 2 75 N -1 0.947 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
102 Contig55_chr7_53147505_53148974 894 A G 68.4 chr7 53148397 G 22 0 2 93 13 0 2 66 16 0 2 75 8 0 2 51 16 0 2 75 11 0 2 60 Y 19 0.060 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
103 Contig4_chr7_53685534_53688206 1709 C G 76.2 chr7 53687225 C 18 0 2 81 17 0 2 78 18 0 2 81 15 0 2 72 14 0 2 69 14 0 2 69 Y 32 0.659 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
104 Contig61_chr7_55832923_55834065 506 T C 185.0 chr7 55833450 C 9 0 2 54 10 0 2 57 22 0 2 93 12 0 2 63 12 0 2 63 7 0 2 48 Y 1 0.019 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
105 Contig91_chr8_12804505_12805470 409 C A 111.0 chr8 12804906 C 8 0 2 51 10 0 2 57 15 0 2 72 12 0 2 63 14 0 2 69 15 0 2 72 N 145 0.175 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
106 Contig8_chr8_27811135_27812620 333 C T 37.9 chr8 27811458 C 4 0 2 39 11 0 2 60 18 0 2 81 5 0 2 42 6 0 2 45 5 0 2 42 Y 1 0.272 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
107 Contig66_chr8_28273102_28273660 175 G C 81.6 chr8 28273263 T 9 0 2 54 17 0 2 78 19 0 2 84 8 0 2 51 16 0 2 75 19 0 2 84 Y 3 2.735 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
108 Contig84_chr8_31375511_31376456 443 T C 125.0 chr8 31375954 T 10 0 2 57 15 0 2 72 27 0 2 108 18 0 2 81 16 0 2 75 9 0 2 54 Y 2 0.650 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
109 Contig18_chr8_32575859_32577431 264 T C 151.0 chr8 32576124 T 20 0 2 87 14 0 2 69 17 0 2 78 14 0 2 69 13 0 2 66 14 0 2 69 Y 17 0.915 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
110 Contig54_chr8_40913908_40916451 1275 G A 175.0 chr8 40915190 G 10 0 2 57 8 0 2 51 11 0 2 60 7 0 2 48 8 0 2 51 9 0 2 54 Y 21 0.056 3
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
111 Contig93_chr8_44658786_44659075 180 T G 55.3 chr8 44658964 T 4 0 2 39 3 0 2 36 6 0 2 45 5 0 2 45 5 0 2 42 4 0 2 39 N 14 0.188 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
112 Contig66_chr8_58562376_58563446 345 C G 5.74 chr8 58562721 C 14 0 2 69 12 0 2 63 9 0 2 57 10 0 2 57 9 0 2 54 10 0 2 57 Y 6 0.685 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
113 Contig44_chr8_71186368_71188207 1455 G T 147.0 chr8 71187818 G 4 10 1 74 3 0 2 36 20 0 2 87 12 0 2 63 8 0 2 51 10 0 2 57 Y 88 0.036 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
114 Contig73_chr9_29451535_29452248 616 A G 24.7 chr9 29452127 G 4 0 2 39 7 0 2 48 1 0 2 30 4 0 2 39 7 0 2 48 6 0 2 45 N 49 0.448 4
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
115 Contig96_chr9_39008495_39009278 215 A C 98.7 chr9 39008708 C 7 0 2 48 13 0 2 66 28 0 2 111 16 0 2 75 17 0 2 78 17 0 2 78 Y 8 0.427 1
d4ec09e8079f New data types
miller-lab
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diff changeset
116 Contig69_chr10_40547265_40548153 371 G A 58.1 chr10 40547649 A 9 0 2 54 8 0 2 51 8 0 2 51 9 0 2 54 4 0 2 39 5 0 2 42 Y 20 0.138 4
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
117 Contig63_chr10_42716594_42719945 1018 A G 88.7 chr10 42717616 G 13 0 2 66 14 0 2 69 13 0 2 66 12 0 2 63 18 0 2 81 5 0 2 42 Y 25 1.740 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
118 Contig22_chr10_43255307_43255570 81 C A 37.2 chr10 43255383 C 15 0 2 72 18 0 2 81 22 0 2 93 16 0 2 75 11 0 2 60 12 0 2 63 N 62 0.450 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
119 Contig9_chr10_51475063_51476054 770 C T 57.3 chr10 51475839 C 6 0 2 45 16 0 2 75 16 0 2 75 13 0 2 66 9 0 2 54 9 2 2 21 N 80 0.394 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
120 Contig42_chr10_53816543_53818392 1642 G A 27.5 chr10 53818172 A 7 0 2 48 13 0 2 66 17 0 2 78 14 0 2 69 19 0 2 84 16 0 2 75 N 1 0.433 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
121 Contig36_chr10_53992615_53993741 229 G C 86.2 chr10 53992846 G 17 0 2 78 14 0 2 69 13 0 2 66 15 0 2 72 12 0 2 63 15 0 2 72 N 23 1.912 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
122 Contig20_chr10_58141129_58141750 575 C T 46.1 chr10 58141701 C 7 0 2 48 8 0 2 51 9 0 2 54 3 0 2 36 4 0 2 39 9 0 2 54 N 1 4.264 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
123 Contig26_chr10_59510973_59511899 146 C A 29.0 chr10 59511126 C 8 0 2 51 13 0 2 66 18 0 2 81 13 0 2 66 10 0 2 57 7 0 2 48 Y 208 1.077 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
124 Contig72_chr11_7142765_7143772 146 G A 152.0 chr11 7142911 A 8 0 2 51 8 0 2 51 24 0 2 99 10 0 2 57 17 0 2 78 11 0 2 60 Y 90 1.137 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
125 Contig9_chr11_9904571_9905983 1284 C T 151.0 chr11 9905857 C 16 0 2 75 19 0 2 84 17 0 2 78 16 0 2 75 12 0 2 63 13 1 2 44 Y 11 0.422 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
126 Contig7_chr11_40017076_40017630 352 C T 46.3 chr11 40017422 C 7 0 2 48 9 0 2 54 6 0 2 45 8 0 2 51 16 0 2 75 9 0 2 54 Y 44 0.336 0
d4ec09e8079f New data types
miller-lab
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127 Contig108_chr11_42953408_42955156 367 A G 89.4 chr11 42953779 A 17 0 2 78 11 0 2 60 14 0 2 69 20 0 2 87 14 0 2 69 17 0 2 78 Y 118 0.784 1
d4ec09e8079f New data types
miller-lab
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diff changeset
128 Contig16_chr11_53408448_53408790 187 A G 153.0 chr11 53408638 A 7 0 2 48 9 0 2 54 18 0 2 81 10 0 2 57 11 0 2 60 12 0 2 63 Y 116 1.367 0
d4ec09e8079f New data types
miller-lab
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diff changeset
129 Contig21_chr12_18403415_18404381 586 G T 34.5 chr12 18403983 - 13 0 2 66 16 0 2 75 25 0 2 102 12 0 2 63 12 0 2 63 14 0 2 69 Y 12 0.068 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
130 Contig33_chr12_19804073_19804529 178 T C 69.4 chr12 19804261 T 13 0 2 66 13 0 2 66 22 0 2 93 11 0 2 60 12 0 2 63 18 0 2 81 Y 11 1.571 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
131 Contig41_chr12_25565452_25566993 475 G T 6.29 chr12 25565926 G 15 0 2 72 14 0 2 69 10 0 2 57 15 0 2 72 18 0 2 81 19 0 2 84 N 10 2.231 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
132 Contig9_chr12_27204351_27204696 239 A G 145.0 chr12 27204587 A 7 0 2 48 8 0 2 51 12 0 2 63 8 0 2 51 11 0 2 60 11 0 2 60 Y 14 0.046 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
133 Contig45_chr12_30548282_30550498 448 C T 124.0 chr12 30548703 - 9 0 2 54 11 0 2 60 22 0 2 93 19 0 2 84 12 0 2 63 12 0 2 63 Y 66 0.305 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
134 Contig46_chr12_35571846_35572563 58 G C 83.2 chr12 35571906 G 4 0 2 39 10 0 2 57 11 0 2 60 6 0 2 45 10 0 2 57 6 0 2 45 Y 55 +99. 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
135 Contig28_chr12_42075871_42076044 136 G A 134.0 chr12 42076006 A 6 0 2 45 5 0 2 42 7 0 2 48 7 0 2 48 2 0 2 33 4 0 2 39 N 3 9.479 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
136 Contig16_chr12_42386141_42387454 194 A G 161.0 chr12 42386323 A 11 0 2 60 8 0 2 54 23 0 2 96 17 0 2 78 6 0 2 45 13 0 2 66 Y 7 0.927 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
137 Contig42_chr12_44424628_44425829 255 A G 84.4 chr12 44424879 A 12 0 2 63 19 0 2 84 23 0 2 96 15 0 2 72 18 0 2 81 14 0 2 69 Y 18 1.190 2
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
138 Contig10_chr12_44447953_44449698 63 C T 105.0 chr12 44448020 C 11 0 2 60 9 0 2 54 12 0 2 63 10 0 2 57 15 0 2 72 8 0 2 51 Y 31 11.791 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
139 Contig5_chr12_53880670_53882675 1221 A C 99.4 chr12 53881888 A 16 0 2 75 18 0 2 81 23 0 2 96 10 0 2 57 15 0 2 72 17 0 2 78 Y 31 0.061 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
140 Contig86_chr12_56715356_56716464 818 T C 166.0 chr12 56716164 T 20 0 2 87 16 0 2 75 16 0 2 75 14 0 2 69 13 0 2 66 7 0 2 48 Y 22 1.092 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
141 Contig3_chr12_65021967_65024097 238 T G 92.6 chr12 65022205 T 17 0 2 78 14 0 2 69 16 0 2 75 9 0 2 54 13 0 2 66 15 0 2 72 Y 258 0.117 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
142 Contig43_chr12_66499742_66500010 121 G T 41.5 chr12 66499866 G 12 0 2 63 4 0 2 39 8 0 2 51 6 0 2 45 10 0 2 57 6 0 2 45 N 42 0.421 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
143 Contig14_chr12_71364692_71365311 20 A C 103.0 chr12 71364712 A 7 0 2 48 3 0 2 36 5 0 2 42 1 0 2 30 2 0 2 33 3 0 2 36 Y 35 +99. 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
144 Contig37_chr13_15910164_15910426 245 G A 32.9 chr13 -1 N 3 4 1 41 4 0 2 39 3 0 2 36 4 0 2 39 3 0 2 36 10 0 2 57 N -1 2.159 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
145 Contig107_chr13_26045881_26046290 341 C G 81.4 chr13 26046230 C 16 0 2 75 20 0 2 90 14 0 2 69 15 0 2 72 9 0 2 54 9 0 2 54 Y 51 4.510 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
146 Contig251_chr13_28498333_28501066 864 T G 296.0 chr13 28499180 T 3 0 2 36 5 0 2 42 4 0 2 39 2 0 2 33 5 0 2 42 6 0 2 45 Y 9 0.068 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
147 Contig154_chr13_36777857_36778736 356 G A 95.5 chr13 36778225 A 6 0 2 45 11 0 2 60 11 0 2 60 9 0 2 54 13 0 2 66 8 0 2 51 Y 59 0.192 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
148 Contig37_chr13_42529793_42530857 150 G T 192.0 chr13 42529926 G 18 0 2 81 14 0 2 69 16 0 2 75 14 0 2 69 8 0 2 51 11 0 2 60 N 22 0.795 5
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
149 Contig47_chr13_47045833_47046626 257 A C 28.5 chr13 47046097 A 13 0 2 66 10 0 2 57 17 0 2 78 20 0 2 87 15 0 2 72 9 0 2 57 N 129 0.468 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
150 Contig42_chr13_47730018_47730856 254 A G 75.1 chr13 47730294 A 13 0 2 66 6 0 2 45 12 0 2 63 9 0 2 54 16 0 2 75 11 0 2 63 Y 630 0.049 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
151 Contig55_chr13_53467708_53468101 221 T G 132.0 chr13 53467925 T 25 0 2 102 12 0 2 63 26 0 2 105 7 0 2 48 16 0 2 75 16 0 2 75 N 20 5.717 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
152 Contig49_chr13_55103679_55105532 503 G A 76.0 chr13 55104178 G 21 0 2 90 19 0 2 84 18 0 2 81 20 0 2 87 8 9 1 89 17 0 2 78 Y 20 0.259 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
153 Contig66_chr13_66021813_66022244 319 C T 125.0 chr13 66022136 C 11 0 2 60 16 0 2 75 15 0 2 75 12 0 2 63 17 0 2 78 8 0 2 51 N 14 0.055 3
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
154 Contig48_chr14_11839435_11843272 3014 A G 163.0 chr14 11842446 A 10 0 2 57 8 0 2 51 13 0 2 66 10 0 2 57 5 0 2 42 10 0 2 57 Y 31 0.908 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
155 Contig9_chr14_23353717_23354432 80 G A 61.3 chr14 23353797 G 3 0 2 36 6 0 2 45 11 0 2 60 8 0 2 51 4 0 2 39 2 4 1 35 Y 11 0.444 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
156 Contig14_chr14_24131180_24133488 1633 G A 131.0 chr14 24132818 G 21 0 2 90 16 0 2 75 12 0 2 63 10 0 2 57 11 0 2 60 20 0 2 87 Y 36 0.347 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
157 Contig28_chr14_26905747_26909514 975 G C 3.13 chr14 26906723 G 16 0 2 75 10 0 2 57 12 0 2 63 15 0 2 72 10 0 2 57 7 0 2 48 N 287 0.117 2
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
158 Contig14_chr14_29616948_29618316 109 G A 80.3 chr14 29617053 - 17 0 2 78 16 0 2 75 16 0 2 75 10 0 2 57 17 0 2 78 19 0 2 84 Y 32 1.051 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
159 Contig76_chr14_30028102_30029179 1046 C T 38.5 chr14 30029169 T 3 0 2 36 6 0 2 45 9 0 2 54 7 0 2 48 9 0 2 54 8 0 2 51 Y 96 +99. 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
160 Contig115_chr14_31417207_31417574 259 A G 12.1 chr14 31417454 G 13 0 2 66 15 0 2 72 21 0 2 90 12 0 2 63 13 0 2 66 9 0 2 54 N 28 5.379 2
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
161 Contig70_chr14_46653662_46653790 111 G A 46.7 chr14 46653768 G 7 0 2 48 5 0 2 42 11 0 2 60 11 0 2 60 8 0 2 51 10 0 2 57 N 21 +99. 2
d4ec09e8079f New data types
miller-lab
parents:
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162 Contig43_chr14_49991855_49993511 918 A G 112.0 chr14 49992767 G 15 0 2 72 10 0 2 57 11 0 2 63 9 0 2 54 12 0 2 63 9 0 2 54 Y 6 0.314 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
163 Contig64_chr14_56768376_56768902 473 C T 29.0 chr14 56768832 C 15 0 2 72 11 0 2 60 14 0 2 69 14 0 2 69 7 0 2 48 9 0 2 54 Y 91 8.281 0
d4ec09e8079f New data types
miller-lab
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diff changeset
164 Contig60_chr15_18493036_18494316 150 G A 92.6 chr15 18493188 G 9 0 2 54 13 0 2 66 9 0 2 54 6 0 2 45 5 0 2 42 12 0 2 63 Y 45 0.125 0
d4ec09e8079f New data types
miller-lab
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165 Contig59_chr15_22138344_22138535 120 G C 142.0 chr15 22138470 C 11 0 2 60 10 0 2 57 18 0 2 81 4 0 2 39 10 0 2 57 15 0 2 72 N 8 2.553 0
d4ec09e8079f New data types
miller-lab
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166 Contig112_chr15_26772864_26773267 374 C T 21.6 chr15 26773244 C 4 0 2 39 4 0 2 39 5 0 2 42 2 0 2 33 4 0 2 39 3 0 2 36 N 18 +99. 0
d4ec09e8079f New data types
miller-lab
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167 Contig24_chr15_26894765_26895003 155 G A 87.6 chr15 -1 N 6 0 2 45 5 0 2 42 7 0 2 48 4 0 2 39 4 0 2 39 2 0 2 33 N -1 0.178 0
d4ec09e8079f New data types
miller-lab
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168 Contig2_chr15_33944796_33947182 1860 G A 99.5 chr15 33946654 G 10 0 2 57 11 0 2 60 16 0 2 75 14 0 2 69 14 0 2 69 16 0 2 75 Y 16 0.252 0
d4ec09e8079f New data types
miller-lab
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169 Contig73_chr15_34690052_34691332 714 T C 130.0 chr15 34690769 T 7 0 2 48 7 0 2 48 17 0 2 78 9 0 2 54 9 0 2 54 4 0 2 39 Y 7 6.003 0
d4ec09e8079f New data types
miller-lab
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diff changeset
170 Contig68_chr15_37747190_37747426 126 G A 130.0 chr15 37747331 G 14 0 2 69 14 0 2 69 11 0 2 63 19 0 2 84 13 0 2 66 21 0 2 90 N 229 0.255 0
d4ec09e8079f New data types
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171 Contig104_chr15_45106954_45107158 70 A T 64.4 chr15 45107015 A 6 0 2 45 6 0 2 45 19 0 2 84 7 0 2 48 7 0 2 48 3 0 2 36 N 202 4.319 0
d4ec09e8079f New data types
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172 Contig119_chr16_6160274_6160477 180 G A 54.8 chr16 6160457 G 7 0 2 48 6 0 2 45 12 0 2 63 3 0 2 36 11 0 2 60 10 0 2 57 N 42 +99. 0
d4ec09e8079f New data types
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173 Contig126_chr16_10611887_10612152 150 G T 145.0 chr16 10612037 G 14 0 2 69 9 0 2 54 11 0 2 63 8 0 2 51 8 0 2 51 11 0 2 60 N 15 0.104 6
d4ec09e8079f New data types
miller-lab
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174 Contig43_chr16_20200090_20200514 70 A G 58.6 chr16 20200154 A 11 0 2 60 15 0 2 72 15 0 2 72 6 0 2 45 9 0 2 54 12 0 2 63 Y 2 0.466 1
d4ec09e8079f New data types
miller-lab
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175 Contig60_chr16_28079136_28080263 588 T G 157.0 chr16 28079739 T 22 0 2 93 20 0 2 87 22 0 2 93 17 0 2 78 12 0 2 63 10 0 2 57 Y 105 5.999 1
d4ec09e8079f New data types
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176 Contig70_chr16_33758668_33759655 104 A T 58.1 chr16 33758772 A 6 0 2 45 7 0 2 48 17 0 2 78 14 0 2 69 8 0 2 51 10 0 2 57 N 54 0.162 0
d4ec09e8079f New data types
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177 Contig66_chr16_37935682_37935831 116 T C 99.2 chr16 37935802 C 12 0 2 63 6 0 2 45 19 0 2 84 12 0 2 63 13 0 2 66 17 0 2 78 N 266 +99. 2
d4ec09e8079f New data types
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178 Contig16_chr16_40451506_40451643 84 A G 59.8 chr16 40451592 A 7 0 2 48 5 0 2 42 7 0 2 48 13 0 2 66 14 0 2 69 19 0 2 84 N 45 5.061 0
d4ec09e8079f New data types
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179 Contig31_chr17_12128267_12129637 205 G A 90.5 chr17 12128484 G 7 0 2 48 6 0 2 45 6 0 2 45 11 0 2 60 7 0 2 48 4 0 2 39 Y 10 0.246 0
d4ec09e8079f New data types
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180 Contig1_chr17_12979232_12980380 808 G T 12.3 chr17 12980028 G 18 0 2 81 12 0 2 63 21 0 2 90 13 0 2 66 22 0 2 93 18 0 2 81 Y 9 0.336 1
d4ec09e8079f New data types
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181 Contig42_chr17_23434859_23438330 2100 C T 39.5 chr17 23436985 T 4 0 2 39 7 0 2 48 7 0 2 48 3 0 2 36 6 0 2 45 2 0 2 33 Y 25 0.344 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
182 Contig63_chr17_23796320_23796814 220 A G 54.0 chr17 23796536 G 6 0 2 45 4 0 2 39 5 0 2 42 6 0 2 45 4 0 2 39 6 0 2 45 Y 139 0.067 1
d4ec09e8079f New data types
miller-lab
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diff changeset
183 Contig76_chr17_24107434_24107834 316 T C 141.0 chr17 24107726 T 19 0 2 84 15 0 2 72 20 0 2 87 16 0 2 75 11 0 2 60 18 0 2 81 Y 30 0.175 2
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
184 Contig99_chr17_26021506_26022200 505 C T 88.8 chr17 26022017 T 15 0 2 72 13 0 2 66 19 0 2 84 9 0 2 54 10 0 2 57 11 0 2 60 Y 1 0.172 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
185 Contig59_chr17_26790302_26795045 287 C T 45.1 chr17 26790582 C 8 0 2 51 6 0 2 45 13 0 2 66 6 0 2 45 15 0 2 72 12 0 2 63 Y 75 0.019 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
186 Contig99_chr17_27018324_27019378 446 G A 31.1 chr17 27018776 G 14 0 2 69 12 0 2 63 14 0 2 69 10 0 2 57 9 0 2 54 11 0 2 60 Y 13 0.290 4
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
187 Contig125_chr17_27739115_27739410 63 G A 107.0 chr17 27739177 G 8 0 2 51 11 0 2 60 16 0 2 75 8 0 2 51 4 0 2 39 15 0 2 72 N 100 0.819 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
188 Contig115_chr17_37489899_37490101 159 G A 62.4 chr17 37490067 G 4 0 2 39 3 0 2 36 4 0 2 39 4 0 2 39 3 0 2 36 6 0 2 45 N 4 1.411 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
189 Contig180_chr17_45154356_45154925 524 A G 146.0 chr17 45154886 G 7 0 2 48 9 0 2 54 7 0 2 48 9 0 2 54 4 0 2 39 8 0 2 51 Y 11 +99. 2
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
190 Contig61_chr17_48221795_48223545 1404 T A 177.0 chr17 48223216 T 15 0 2 72 14 0 2 69 24 0 2 99 17 0 2 78 18 0 2 81 24 0 2 99 Y 161 0.633 2
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
191 Contig27_chr17_61713766_61716585 1056 G C 40.0 chr17 61714821 G 4 0 2 39 8 0 2 51 10 0 2 57 6 0 2 45 6 0 2 45 3 0 2 36 N 6 2.200 4
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
192 Contig229_chr18_3706523_3708577 1076 A G 83.9 chr18 3707630 A 11 0 2 60 13 0 2 66 26 0 2 105 11 0 2 60 15 0 2 72 17 0 2 78 Y 63 0.445 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
193 Contig24_chr18_14049894_14050480 24 A G 123.0 chr18 14049918 A 5 0 2 42 5 0 2 42 4 0 2 39 6 0 2 45 7 0 2 48 5 0 2 42 Y 17 +99. 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
194 Contig123_chr18_19916160_19916379 116 G A 79.2 chr18 19916272 A 14 0 2 69 12 0 2 63 14 0 2 69 6 0 2 45 11 0 2 60 10 0 2 57 N 26 0.172 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
195 Contig82_chr18_27305489_27306229 566 C T 49.5 chr18 27306051 A 6 0 2 45 6 0 2 45 10 0 2 57 11 0 2 60 6 0 2 45 7 0 2 48 N 1 0.349 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
196 Contig71_chr18_34324706_34326687 136 G A 151.0 chr18 34324841 G 9 0 2 54 9 0 2 54 17 0 2 78 8 0 2 51 11 0 2 60 10 0 2 57 Y 2 2.129 2
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
197 Contig16_chr18_34672093_34673044 538 T C 58.2 chr18 34672635 T 8 0 2 51 15 0 2 72 16 0 2 75 15 0 2 72 9 0 2 57 18 0 2 81 Y 8 0.214 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
198 Contig96_chr18_38492535_38493333 624 G A 119.0 chr18 38493162 T 17 0 2 78 12 0 2 63 13 0 2 66 16 0 2 75 8 0 2 51 15 0 2 72 Y 127 0.131 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
199 Contig226_chr18_47753756_47754666 427 T C 21.1 chr18 47754215 T 10 0 2 57 4 0 2 39 8 0 2 51 5 0 2 42 6 0 2 45 7 0 2 48 Y 42 0.522 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
200 Contig170_chr18_49411558_49412230 94 C A 74.3 chr18 49411655 C 14 0 2 69 10 0 2 57 9 0 2 54 10 0 2 57 3 0 2 36 3 0 2 36 N 9 1.457 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
201 Contig192_chr18_49419342_49420737 1058 C T 42.8 chr18 49420381 A 3 0 2 36 4 0 2 39 5 0 2 42 8 0 2 51 3 0 2 36 3 0 2 36 Y 34 2.107 2
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
202 Contig64_chr18_55979770_55980315 49 G A 89.1 chr18 55979824 G 3 0 2 36 9 0 2 54 7 0 2 51 4 0 2 39 3 0 2 36 3 0 2 36 Y -1 2.124 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
203 Contig20_chr18_58130301_58130735 112 A G 74.4 chr18 58130413 A 12 0 2 66 11 0 2 60 11 0 2 60 12 0 2 63 6 0 2 45 6 0 2 45 Y 10 0.290 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
204 Contig67_chr19_12398520_12399367 499 C T 161.0 chr19 12399017 C 10 0 2 57 11 0 2 60 20 0 2 87 14 0 2 69 24 0 2 99 8 0 2 51 Y 137 5.634 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
205 Contig66_chr19_16285672_16287223 996 C T 190.0 chr19 16286674 C 9 0 2 57 14 0 2 69 16 0 2 78 17 0 2 78 8 0 2 51 22 0 2 93 Y 40 0.110 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
206 Contig129_chr19_25541958_25542221 202 T C 68.1 chr19 25542154 C 11 0 2 60 19 0 2 84 10 0 2 60 17 0 2 78 9 0 2 54 12 0 2 63 N -1 2.551 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
207 Contig29_chr19_37339947_37341911 1692 C T 211.0 chr19 37341631 C 15 0 2 72 20 0 2 87 11 0 2 60 15 0 2 72 3 0 2 36 12 0 2 63 Y 7 0.096 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
208 Contig39_chr19_47709708_47711327 444 C T 36.8 chr19 47710148 T 10 0 2 57 4 0 2 39 8 0 2 51 9 0 2 54 6 0 2 45 6 0 2 45 Y 95 1.251 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
209 Contig60_chr19_54013816_54014398 281 A G 138.0 chr19 54014103 C 6 0 2 45 15 0 2 72 7 0 2 48 10 0 2 57 15 0 2 72 10 0 2 57 Y 188 1.271 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
210 Contig251_chr19_56559098_56559626 452 T C 3.36 chr19 56559549 T 12 0 2 63 13 0 2 66 21 0 2 90 15 0 2 72 14 0 2 69 11 0 2 60 N 1 0.117 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
211 Contig50_chr20_12138509_12141975 3206 C A 248.0 chr20 12141763 C 8 0 2 51 15 0 2 72 14 0 2 69 6 0 2 45 10 0 2 57 7 0 2 48 Y 2 0.384 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
212 Contig36_chr20_32631363_32632049 176 G A 24.1 chr20 32631526 G 7 0 2 48 14 0 2 69 19 0 2 84 14 0 2 69 15 0 2 72 16 0 2 75 N 50 1.150 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
213 Contig32_chr20_36468058_36468869 66 C T 40.4 chr20 36468127 C 6 0 2 45 3 0 2 36 4 0 2 39 5 0 2 42 3 0 2 36 4 0 2 39 N 59 0.281 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
214 Contig24_chr20_38203888_38204900 834 C T 132.0 chr20 38204731 C 9 0 2 54 17 0 2 78 20 0 2 87 8 0 2 51 11 0 2 60 17 0 2 78 Y 14 0.397 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
215 Contig79_chr20_44263127_44264103 456 G T 31.5 chr20 44263573 G 22 0 2 93 16 0 2 75 15 0 2 72 19 0 2 84 13 0 2 66 26 0 2 105 Y 8 3.250 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
216 Contig26_chr20_45878482_45878787 197 A G 160.0 chr20 45878672 A 17 0 2 78 15 0 2 72 11 0 2 63 17 0 2 78 12 0 2 63 10 0 2 57 N 14 0.535 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
217 Contig119_chr20_46550670_46551383 609 G A 139.0 chr20 46551277 G 7 0 2 48 17 0 2 78 19 0 2 84 20 0 2 87 9 0 2 54 15 0 2 72 Y 7 0.488 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
218 Contig50_chr21_4178523_4178687 121 G A 362.0 chr21 4178640 G 8 0 2 51 14 0 2 69 5 0 2 42 3 0 2 36 11 0 2 60 4 0 2 39 N 392 0.483 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
219 Contig103_chr21_10177255_10177765 121 G A 125.0 chr21 10177367 G 12 0 2 63 10 0 2 57 10 0 2 57 17 0 2 78 14 0 2 69 7 0 2 51 Y 37 0.213 3
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
220 Contig1_chr21_10805534_10806399 766 A G 146.0 chr21 10806301 G 10 0 2 57 6 0 2 45 9 0 2 54 6 0 2 45 7 0 2 48 5 0 2 42 Y 20 0.319 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
221 Contig46_chr21_21029492_21030645 443 C T 5.37 chr21 21029910 C 15 0 2 72 11 0 2 60 16 0 2 75 15 0 2 72 13 0 2 66 6 0 2 45 Y 96 3.737 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
222 Contig129_chr21_31045749_31046924 381 A G 129.0 chr21 31046141 A 19 0 2 84 8 0 2 51 23 0 2 96 12 0 2 63 15 0 2 72 18 0 2 81 Y 69 0.028 2
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
223 Contig23_chr21_31651123_31651986 840 C T 71.3 chr21 31651957 T 6 0 2 45 9 0 2 54 8 0 2 51 10 0 2 57 4 0 2 39 7 0 2 48 Y 105 2.977 3
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
224 Contig64_chr21_43341847_43342031 84 T C 114.0 chr21 43341926 T 11 0 2 60 9 0 2 54 10 0 2 57 6 0 2 45 6 0 2 45 7 0 2 48 N 10 3.954 2
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
225 Contig60_chr21_43475347_43475824 175 C T 8.05 chr21 43475551 T 6 0 2 45 7 0 2 48 13 0 2 66 6 0 2 45 14 0 2 69 14 0 2 69 N 45 0.058 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
226 Contig159_chr22_7896450_7896974 109 G C 151.0 chr22 7896570 G 16 0 2 75 5 7 1 62 14 0 2 69 16 0 2 75 13 0 2 66 13 0 2 66 Y 16 0.465 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
227 Contig46_chr22_9416920_9417467 381 G A 145.0 chr22 9417259 G 10 0 2 57 9 0 2 54 10 0 2 57 6 0 2 45 13 0 2 66 7 0 2 48 Y 154 0.242 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
228 Contig86_chr22_9440787_9441725 713 T G 119.0 chr22 9441488 G 6 0 2 45 12 0 2 63 10 0 2 57 11 0 2 60 13 0 2 66 16 0 2 75 Y 132 0.218 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
229 Contig16_chr22_15636960_15637372 236 A C 9.79 chr22 15637192 T 4 0 2 39 5 0 2 42 12 0 2 63 7 0 2 48 6 0 2 45 11 0 2 60 Y 5 2.163 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
230 Contig4_chr22_16114310_16114546 128 G C 101.0 chr22 16114432 G 10 0 2 57 13 0 2 66 20 0 2 87 20 0 2 87 16 0 2 75 9 0 2 54 N 19 0.526 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
231 Contig23_chr22_34612023_34612568 167 C G 92.3 chr22 34612181 C 11 0 2 60 18 0 2 81 13 0 2 66 8 0 2 51 12 0 2 63 14 0 2 69 Y 7 0.409 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
232 Contig4_chr22_38252245_38253712 799 A C 159.0 chr22 38253064 A 18 0 2 81 15 0 2 72 15 0 2 72 20 0 2 87 27 0 2 108 15 0 2 72 Y 90 4.330 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
233 Contig122_chr22_48412466_48414788 1888 C T 125.0 chr22 48414355 T 16 0 2 75 15 0 2 72 16 0 2 75 14 0 2 72 12 0 2 63 7 0 2 48 N 42 0.122 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
234 Contig77_chr22_49764414_49764875 353 C A 148.0 chr22 49764777 C 7 4 1 65 18 0 2 81 16 0 2 75 20 0 2 87 4 3 1 52 9 4 1 67 Y 12 0.941 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
235 Contig26_chr22_57817664_57819633 1453 A G 150.0 chr22 57819121 G 9 0 2 54 9 0 2 54 13 0 2 66 15 0 2 72 11 0 2 60 14 0 2 69 N 15 0.471 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
236 Contig348_chr22_62406104_62406495 189 C A 134.0 chr22 62406302 A 9 0 2 54 14 0 2 69 11 0 2 60 10 0 2 57 12 0 2 63 6 0 2 45 Y 5 0.912 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
237 Contig133_chr23_3525134_3526502 1223 A G 201.0 chr23 3526387 A 11 0 2 60 13 0 2 66 23 0 2 96 21 0 2 90 13 0 2 66 10 0 2 57 Y 61 1.359 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
238 Contig111_chr23_7058063_7058181 107 G A 108.0 chr23 7058162 A 8 0 2 51 8 0 2 51 7 0 2 48 2 0 2 33 5 0 2 42 6 0 2 45 N 3 +99. 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
239 Contig79_chr23_7844129_7844837 110 C A 141.0 chr23 7844237 T 13 0 2 66 15 0 2 72 17 0 2 78 12 0 2 63 15 0 2 72 16 0 2 75 Y 40 0.339 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
240 Contig38_chr23_9201002_9201725 597 C T 155.0 chr23 9201609 T 17 0 2 78 8 0 2 51 13 0 2 66 5 0 2 42 11 0 2 60 7 0 2 48 Y 167 0.633 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
241 Contig33_chr23_20672540_20674320 347 T A 91.4 chr23 20672885 A 11 0 2 60 14 0 2 69 15 0 2 72 7 0 2 48 12 0 2 63 18 0 2 81 Y 31 0.452 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
242 Contig35_chr23_28447813_28449115 70 T A 21.3 chr23 28447881 T 9 0 2 54 8 0 2 51 10 0 2 57 9 0 2 54 10 0 2 57 12 0 2 63 N 251 0.163 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
243 Contig51_chr23_30590939_30591162 140 C T 142.0 chr23 30591080 C 14 0 2 69 4 0 2 39 10 0 2 57 12 0 2 63 14 0 2 69 4 0 2 39 N 13 1.658 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
244 Contig57_chr23_32216351_32216721 179 T G 143.0 chr23 32216534 T 15 0 2 72 15 0 2 72 23 0 2 96 13 0 2 66 16 0 2 75 15 0 2 72 N 32 1.387 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
245 Contig93_chr23_35744841_35745791 40 A T 30.4 chr23 35744880 T 6 0 2 45 7 0 2 48 7 0 2 48 2 0 2 33 5 0 2 42 5 0 2 42 Y 50 2.173 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
246 Contig32_chr23_48285289_48286638 186 T C 176.0 chr23 48285470 T 18 0 2 81 12 0 2 63 16 0 2 75 13 0 2 66 9 0 2 54 9 0 2 54 Y 4 4.238 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
247 Contig50_chr24_22515247_22516072 761 C T 243.0 chr24 22515981 T 11 0 2 60 10 0 2 57 8 0 2 51 9 0 2 54 18 0 2 81 8 0 2 51 Y 1 0.190 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
248 Contig84_chr24_29196623_29199644 466 C T 126.0 chr24 29197091 T 7 0 2 48 11 0 2 60 8 0 2 51 7 0 2 48 11 0 2 60 15 0 2 72 Y 42 0.215 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
249 Contig145_chr24_34778364_34778898 163 T C 372.0 chr24 34778541 C 10 0 2 57 8 0 2 51 12 0 2 63 12 0 2 63 6 1 2 31 7 0 2 48 Y 40 0.037 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
250 Contig34_chr24_36147443_36150244 2679 C T 140.0 chr24 36150125 C 13 0 2 66 7 0 2 48 14 0 2 69 14 0 2 69 10 0 2 57 13 0 2 66 N 282 0.099 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
251 Contig164_chr24_46598127_46599206 84 C T 105.0 chr24 46598214 C 13 0 2 66 12 0 2 63 15 0 2 72 15 0 2 72 11 0 2 60 8 0 2 51 Y 22 1.262 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
252 Contig144_chr25_4011170_4013134 541 A G 160.0 chr25 4011690 A 12 0 2 63 17 0 2 78 13 0 2 66 13 0 2 66 13 0 2 66 13 0 2 66 Y 5 0.087 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
253 Contig81_chr25_6103472_6104760 699 G A 378.0 chr25 6104190 A 14 0 2 69 16 0 2 75 13 0 2 66 11 0 2 60 11 0 2 60 12 0 2 63 Y 33 0.789 2
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
254 Contig152_chr25_7486442_7487609 75 A G 11.6 chr25 7486515 A 17 0 2 78 13 0 2 66 8 0 2 51 16 0 2 75 8 0 2 51 6 0 2 45 N 2 0.158 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
255 Contig24_chr25_7695778_7698612 2714 C T 130.0 chr25 7698446 C 16 0 2 75 13 0 2 66 22 0 2 93 17 0 2 78 10 0 2 57 17 0 2 78 Y 27 0.346 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
256 Contig89_chr25_8635170_8636009 586 G C 209.0 chr25 8635744 G 13 0 2 66 13 0 2 66 21 0 2 93 14 0 2 69 15 0 2 72 15 0 2 72 Y 14 0.067 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
257 Contig59_chr25_18196776_18197707 785 G A 112.0 chr25 18197551 G 8 10 1 42 27 0 2 108 21 0 2 90 18 0 2 81 10 0 2 57 14 0 2 69 N 36 3.625 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
258 Contig103_chr25_38891221_38892140 407 G A 131.0 chr25 38891644 G 8 0 2 51 14 0 2 69 18 0 2 81 8 0 2 51 8 0 2 51 11 0 2 60 Y 149 0.167 4
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
259 Contig84_chr25_42407960_42408708 55 C T 119.0 chr25 42408013 C 6 0 2 45 9 0 2 54 11 0 2 60 9 0 2 54 7 0 2 48 8 0 2 51 Y 11 0.121 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
260 Contig73_chr25_43562500_43564110 955 T C 52.1 chr25 43563469 C 9 0 2 57 4 0 2 39 6 0 2 45 5 0 2 42 7 0 2 48 10 0 2 57 Y 4 1.406 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
261 Contig37_chr25_51074433_51074885 170 A G 102.0 chr25 51074589 G 11 0 2 60 7 0 2 48 6 0 2 45 15 0 2 72 9 0 2 54 7 0 2 48 Y 68 0.207 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
262 Contig204_chr26_4311195_4311778 170 C T 16.9 chr26 4311363 T 20 0 2 87 8 0 2 51 13 0 2 66 18 0 2 81 11 0 2 60 14 0 2 69 N 35 0.085 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
263 Contig122_chr26_7622321_7623491 106 C G 139.0 chr26 7622423 C 3 0 2 36 9 0 2 54 10 0 2 57 12 0 2 63 9 0 2 54 5 0 2 42 N 19 0.458 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
264 Contig11_chr26_11062142_11062902 707 C A 108.0 chr26 11062836 T 7 0 2 48 8 0 2 51 16 0 2 75 10 0 2 57 6 0 2 45 14 0 2 69 Y -1 4.709 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
265 Contig133_chr26_17695661_17696368 39 T G 98.7 chr26 17695700 T 10 0 2 57 3 0 2 36 11 0 2 60 9 0 2 54 2 0 2 33 1 0 2 30 N 85 3.402 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
266 Contig146_chr26_26622638_26623906 574 G A 186.0 chr26 26623219 A 11 0 2 60 12 0 2 63 9 0 2 54 11 0 2 60 9 0 2 54 12 0 2 63 Y 1 0.318 0
d4ec09e8079f New data types
miller-lab
parents:
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267 Contig8_chr26_27834126_27834326 140 G A 41.7 chr26 27834268 G 13 0 2 66 7 0 2 48 13 0 2 66 11 0 2 60 12 0 2 63 6 0 2 45 N 29 0.142 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
268 Contig78_chr26_31128839_31129005 123 T C 145.0 chr26 -1 N 11 0 2 60 3 0 2 36 7 0 2 48 8 0 2 51 10 0 2 46 7 0 2 48 N -1 1.230 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
269 Contig28_chr26_32935355_32935833 289 T C 77.9 chr26 32935638 T 15 0 2 72 22 0 2 93 15 0 2 72 9 0 2 54 15 0 2 72 17 0 2 78 Y 10 2.258 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
270 Contig135_chr27_6853874_6854079 158 C T 116.0 chr27 6854032 T 18 0 2 81 19 0 2 84 13 0 2 66 7 0 2 48 8 0 2 51 11 0 2 60 N 4 0.060 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
271 Contig47_chr27_11777710_11777915 25 A G 67.3 chr27 11777731 A 3 0 2 36 5 0 2 42 6 0 2 45 10 0 2 57 9 0 2 54 6 0 2 45 N 97 +99. 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
272 Contig23_chr27_14633002_14633153 23 G A 128.0 chr27 14633023 A 3 0 2 36 4 0 2 39 5 0 2 42 5 0 2 42 3 0 2 36 2 0 2 33 N 240 3.881 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
273 Contig29_chr27_15428166_15429413 380 T C 140.0 chr27 15428539 T 15 0 2 72 15 0 2 72 17 0 2 78 15 0 2 72 15 0 2 72 15 0 2 72 Y 47 0.916 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
274 Contig31_chr27_19519489_19520891 129 G T 14.9 chr27 19519624 T 12 0 2 63 19 0 2 84 20 0 2 87 16 0 2 75 10 0 2 57 11 0 2 60 Y 48 2.756 0
d4ec09e8079f New data types
miller-lab
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275 Contig35_chr27_40596169_40596445 20 G C 133.0 chr27 40596189 G 8 0 2 51 3 0 2 36 4 0 2 39 2 0 2 33 4 0 2 39 4 0 2 39 Y 4 +99. 1
d4ec09e8079f New data types
miller-lab
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276 Contig85_chr27_45471750_45472022 211 G A 53.1 chr27 45471964 G 18 0 2 81 10 0 2 57 15 0 2 72 0 13 0 36 16 0 2 75 14 0 2 69 N 75 2.502 1
d4ec09e8079f New data types
miller-lab
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277 Contig131_chr28_6481806_6483783 138 C T 36.2 chr28 6481953 C 12 0 2 63 12 0 2 63 20 0 2 87 11 0 2 60 10 0 2 57 12 0 2 63 Y 10 0.387 0
d4ec09e8079f New data types
miller-lab
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278 Contig141_chr28_10027332_10028242 780 T G 74.8 chr28 10028095 T 10 0 2 57 11 0 2 60 14 0 2 69 10 0 2 57 7 0 2 48 9 0 2 54 Y 19 3.348 0
d4ec09e8079f New data types
miller-lab
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279 Contig144_chr28_15468203_15470548 743 G A 20.0 chr28 15468942 G 13 0 2 66 12 0 2 63 10 0 2 57 11 0 2 60 16 0 2 75 7 0 2 48 N 14 0.053 0
d4ec09e8079f New data types
miller-lab
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diff changeset
280 Contig47_chr28_21311718_21312366 541 G A 116.0 chr28 21312258 G 9 0 2 54 6 0 2 45 12 0 2 63 6 0 2 45 5 0 2 45 12 0 2 63 N 9 0.240 0
d4ec09e8079f New data types
miller-lab
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281 Contig60_chr28_30197166_30197364 92 T C 164.0 chr28 30197258 T 10 0 2 57 13 0 2 66 15 0 2 72 16 0 2 75 12 0 2 63 11 0 2 60 N 369 1.139 0
d4ec09e8079f New data types
miller-lab
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diff changeset
282 Contig29_chr29_4726399_4727143 559 A T 163.0 chr29 4726955 A 15 0 2 72 18 0 2 81 18 0 2 81 16 0 2 75 11 0 2 60 14 0 2 72 Y 161 3.114 0
d4ec09e8079f New data types
miller-lab
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diff changeset
283 Contig48_chr29_13129286_13130137 232 A G 92.2 chr29 13129514 G 13 0 2 66 11 0 2 60 19 0 2 84 16 0 2 75 11 0 2 60 17 0 2 78 Y 337 2.581 1
d4ec09e8079f New data types
miller-lab
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diff changeset
284 Contig33_chr29_17000374_17000921 71 C T 48.6 chr29 17000441 - 4 0 2 39 9 0 2 54 12 0 2 66 10 0 2 57 7 0 2 48 4 0 2 39 N 26 5.491 0
d4ec09e8079f New data types
miller-lab
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diff changeset
285 Contig34_chr29_17581796_17584016 2105 C T 126.0 chr29 17583890 T 14 0 2 69 11 0 2 60 18 0 2 81 12 0 2 63 10 0 2 57 10 0 2 57 Y 22 2.208 0
d4ec09e8079f New data types
miller-lab
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286 Contig19_chr29_20976080_20977761 1007 G A 115.0 chr29 20977076 G 19 0 2 84 22 0 2 93 22 0 2 93 22 0 2 93 11 0 2 60 13 0 2 66 Y 4 1.915 0
d4ec09e8079f New data types
miller-lab
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diff changeset
287 Contig51_chr29_21149853_21150467 266 C T 146.0 chr29 21150118 C 12 0 2 63 12 0 2 63 23 0 2 96 14 0 2 69 13 0 2 66 10 0 2 57 Y 4 0.051 0
d4ec09e8079f New data types
miller-lab
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diff changeset
288 Contig1_chr30_5992217_5993068 106 C T 129.0 chr30 5992319 C 10 0 2 57 11 0 2 60 7 0 2 48 11 0 2 60 10 0 2 57 12 0 2 63 Y 76 1.079 0
d4ec09e8079f New data types
miller-lab
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diff changeset
289 Contig1_chr30_8232878_8233406 402 C T 127.0 chr30 8233264 C 8 0 2 51 19 0 2 84 16 0 2 75 18 0 2 81 10 0 2 57 14 0 2 69 Y 358 5.283 0
d4ec09e8079f New data types
miller-lab
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diff changeset
290 Contig108_chr30_9436961_9437520 546 C T 39.8 chr30 9437502 C 7 0 2 48 5 0 2 42 2 0 2 33 7 0 2 48 5 0 2 42 7 0 2 48 Y 64 +99. 0
d4ec09e8079f New data types
miller-lab
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291 Contig165_chr30_25804389_25804926 190 T C 126.0 chr30 25804592 C 3 0 2 36 8 0 2 51 7 0 2 48 10 0 2 57 7 0 2 48 4 0 2 39 Y 113 0.329 0
d4ec09e8079f New data types
miller-lab
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292 Contig193_chr30_27495616_27496125 434 C A 234.0 chr30 27496024 C 13 0 2 66 16 0 2 75 25 0 2 102 16 0 2 75 13 0 2 66 14 0 2 69 Y 76 2.621 0
d4ec09e8079f New data types
miller-lab
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293 Contig38_chr31_5164423_5166573 2074 C T 134.0 chr31 5166501 T 13 0 2 66 10 0 2 57 17 0 2 78 11 0 2 60 17 0 2 78 10 0 2 57 Y 58 +99. 0
d4ec09e8079f New data types
miller-lab
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294 Contig6_chr31_9649308_9650149 431 G T 162.0 chr31 9649742 G 31 0 2 120 23 0 2 96 17 0 2 78 17 0 2 78 10 0 2 57 16 0 2 75 Y 98 2.200 0
d4ec09e8079f New data types
miller-lab
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295 Contig7_chr31_12384974_12386400 305 C T 69.6 chr31 12385267 C 6 0 2 45 10 0 2 57 11 0 2 60 11 0 2 60 9 0 2 54 12 0 2 63 Y 44 1.165 0
d4ec09e8079f New data types
miller-lab
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296 Contig90_chr31_17267583_17267778 81 C A 143.0 chr31 17267665 C 20 0 2 87 6 0 2 45 14 0 2 72 22 0 2 93 17 0 2 78 15 0 2 72 N 7 0.565 0
d4ec09e8079f New data types
miller-lab
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297 Contig137_chr31_23357653_23358568 885 G A 119.0 chr31 23358545 G 5 0 2 42 3 0 2 36 3 0 2 36 2 0 2 33 3 0 2 36 4 0 2 39 Y 11 +99. 0
d4ec09e8079f New data types
miller-lab
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298 Contig17_chr31_26433828_26434459 498 T C 9.79 chr31 26434322 T 18 0 2 81 10 0 2 57 15 0 2 72 13 0 2 66 16 0 2 75 15 0 2 72 Y 137 4.814 0
d4ec09e8079f New data types
miller-lab
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299 Contig30_chr32_25902721_25905783 208 C G 162.0 chr32 25902927 G 11 0 2 60 13 0 2 66 11 0 2 60 12 0 2 63 7 0 2 48 11 0 2 60 Y 145 0.322 2
d4ec09e8079f New data types
miller-lab
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300 Contig42_chr32_38900713_38901320 320 A G 134.0 chr32 38901021 T 12 0 2 63 10 0 2 57 9 11 1 104 5 0 2 42 19 0 2 84 7 6 1 56 Y 71 0.165 0
d4ec09e8079f New data types
miller-lab
parents:
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301 Contig18_chr33_22207246_22209159 1363 G T 51.5 chr33 22208619 - 16 0 2 75 8 0 2 51 11 0 2 60 10 0 2 57 15 0 2 72 12 0 2 63 Y 59 2.560 0
d4ec09e8079f New data types
miller-lab
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302 Contig104_chr33_22483642_22484187 424 C T 140.0 chr33 22484054 T 13 0 2 66 16 0 2 75 9 0 2 54 15 0 2 72 13 0 2 66 10 0 2 57 Y 36 0.404 0
d4ec09e8079f New data types
miller-lab
parents:
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303 Contig170_chr33_26189421_26189940 292 T C 98.4 chr33 26189703 T 21 0 2 90 13 0 2 66 15 0 2 72 13 0 2 66 19 0 2 84 13 0 2 66 Y 23 0.307 0
d4ec09e8079f New data types
miller-lab
parents:
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304 Contig41_chr34_16544482_16545449 46 T C 102.0 chr34 16544523 T 5 0 2 42 11 0 2 60 6 0 2 45 0 2 0 3 7 0 2 48 8 0 2 51 Y 215 1.156 0
d4ec09e8079f New data types
miller-lab
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diff changeset
305 Contig8_chr34_18474513_18475673 1122 C A 129.0 chr34 18475628 A 8 0 2 51 15 0 2 72 13 0 2 66 17 0 2 78 13 0 2 66 6 0 2 45 Y 61 0.123 2
d4ec09e8079f New data types
miller-lab
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306 Contig152_chr34_31794848_31795540 242 G A 93.2 chr34 31795093 G 11 0 2 60 24 0 2 99 17 0 2 78 15 0 2 72 18 0 2 81 17 0 2 78 Y 123 2.780 0
d4ec09e8079f New data types
miller-lab
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307 Contig28_chr34_41708848_41712034 1381 A G 78.2 chr34 41710232 A 11 0 2 60 17 0 2 78 15 0 2 72 16 0 2 75 15 0 2 72 14 0 2 69 Y 236 0.234 0
d4ec09e8079f New data types
miller-lab
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308 Contig85_chr34_42798284_42800584 1845 C T 171.0 chr34 42800126 T 5 0 2 42 7 0 2 48 6 0 2 45 7 0 2 48 6 0 2 45 2 0 2 33 Y 5 2.787 0
d4ec09e8079f New data types
miller-lab
parents:
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309 Contig47_chr35_3666773_3667898 348 G T 124.0 chr35 3667121 G 9 0 2 54 20 0 2 87 18 0 2 81 15 0 2 72 12 0 2 63 14 0 2 69 Y 285 0.235 0
d4ec09e8079f New data types
miller-lab
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310 Contig195_chr35_15722500_15722741 205 G A 4.08 chr35 15722718 G 3 0 2 36 5 0 2 42 1 0 2 30 6 0 2 45 1 0 2 30 1 0 2 30 N 43 +99. 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
311 Contig101_chr35_19513178_19513697 62 C T 112.0 chr35 19513238 C 12 0 2 63 7 0 2 48 13 0 2 66 7 0 2 48 5 0 2 42 8 0 2 51 N 115 3.135 0
d4ec09e8079f New data types
miller-lab
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312 Contig47_chr35_24382042_24382526 33 G A 87.0 chr35 24382076 G 5 0 2 42 4 0 2 39 6 0 2 45 7 0 2 48 4 0 2 39 2 0 2 33 Y 71 +99. 0
d4ec09e8079f New data types
miller-lab
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313 Contig77_chr35_24796947_24797172 65 A G 52.1 chr35 24797009 A 7 0 2 48 5 0 2 42 8 0 2 51 6 0 2 45 12 0 2 63 10 0 2 57 N 11 1.401 3
d4ec09e8079f New data types
miller-lab
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314 Contig74_chr35_25394343_25394813 303 A T 221.0 chr35 25394646 G 23 0 2 96 15 0 2 72 25 0 2 105 7 7 1 49 18 0 2 81 16 0 2 75 Y 58 4.298 0
d4ec09e8079f New data types
miller-lab
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diff changeset
315 Contig5_chr36_4562983_4563634 343 C T 151.0 chr36 4563324 T 20 0 2 87 20 0 2 87 23 0 2 96 24 0 2 99 9 0 2 54 8 0 2 51 Y 40 1.169 0
d4ec09e8079f New data types
miller-lab
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316 Contig75_chr36_7885319_7885588 53 G A 25.7 chr36 7885372 G 10 0 2 57 8 0 2 51 13 0 2 66 7 0 2 48 4 0 2 39 7 0 2 48 N 7 2.653 0
d4ec09e8079f New data types
miller-lab
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317 Contig184_chr36_18956191_18958552 187 A G 11.5 chr36 18956371 G 10 0 2 57 11 0 2 60 21 0 2 90 14 0 2 69 7 0 2 48 4 0 2 39 N 278 1.434 2
d4ec09e8079f New data types
miller-lab
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318 Contig12_chr36_21557176_21557828 513 T A 159.0 chr36 21557695 A 11 0 2 60 14 0 2 69 21 0 2 90 12 0 2 63 15 0 2 72 11 0 2 60 Y 55 0.222 0
d4ec09e8079f New data types
miller-lab
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319 Contig2_chr36_22436067_22436794 653 C T 73.0 chr36 22436730 C 11 0 2 60 16 0 2 75 13 0 2 66 11 0 2 60 21 0 2 90 21 0 2 90 Y 9 0.534 0
d4ec09e8079f New data types
miller-lab
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320 Contig133_chr36_32954045_32955409 136 A G 116.0 chr36 32954182 A 16 0 2 75 15 0 2 72 20 0 2 87 11 0 2 60 18 0 2 81 13 0 2 66 Y 74 3.772 1
d4ec09e8079f New data types
miller-lab
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321 Contig53_chr37_6665763_6665919 116 C T 111.0 chr37 6665875 C 9 0 2 54 9 0 2 54 5 0 2 42 9 0 2 54 8 0 2 51 10 0 2 57 N 15 10.875 1
d4ec09e8079f New data types
miller-lab
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322 Contig42_chr37_9589176_9591269 252 G A 25.1 chr37 9589430 G 10 0 2 40 13 0 2 66 18 0 2 81 21 0 2 90 9 0 2 54 17 0 2 78 N 67 1.170 2
d4ec09e8079f New data types
miller-lab
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323 Contig2_chr37_17134963_17136513 1140 A C 158.0 chr37 17136092 A 14 0 2 69 24 0 2 99 17 0 2 78 16 0 2 75 15 0 2 75 13 0 2 66 Y 12 0.053 1
d4ec09e8079f New data types
miller-lab
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diff changeset
324 Contig18_chr37_17147806_17149851 291 T G 112.0 chr37 17148084 T 4 6 1 45 16 0 2 75 17 0 2 78 14 0 2 69 22 0 2 93 13 0 2 66 Y 41 4.442 0
d4ec09e8079f New data types
miller-lab
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diff changeset
325 Contig64_chr37_17606895_17607534 565 C T 30.2 chr37 17607439 A 9 0 2 54 16 0 2 75 20 0 2 87 14 0 2 69 16 0 2 75 10 0 2 57 N 20 1.622 0
d4ec09e8079f New data types
miller-lab
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326 Contig126_chr37_21587881_21590621 373 G T 132.0 chr37 21588256 G 11 0 2 60 11 0 2 60 23 0 2 96 12 0 2 63 8 0 2 51 18 0 2 81 Y 12 0.549 0
d4ec09e8079f New data types
miller-lab
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327 Contig2_chr37_31197993_31198256 182 C T 39.6 chr37 31198171 T 6 0 2 45 10 0 2 57 7 0 2 48 9 0 2 54 10 0 2 57 12 0 2 63 N 2 0.595 0
d4ec09e8079f New data types
miller-lab
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diff changeset
328 Contig46_chr37_31852376_31853555 825 A G 111.0 chr37 31853191 G 19 0 2 84 14 0 2 69 15 0 2 72 7 0 2 48 8 0 2 51 16 0 2 75 Y 17 0.128 1
d4ec09e8079f New data types
miller-lab
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diff changeset
329 Contig7_chr38_12217200_12218387 1163 A T 44.4 chr38 12218353 A 11 0 2 60 13 0 2 66 17 0 2 78 10 0 2 57 11 0 2 60 11 0 2 60 Y 67 +99. 0
d4ec09e8079f New data types
miller-lab
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diff changeset
330 Contig15_chr38_12282020_12282253 150 C T 156.0 chr38 12282164 A 17 0 2 78 11 0 2 60 19 0 2 84 14 0 2 69 5 0 2 42 14 0 2 69 Y 26 2.952 1
d4ec09e8079f New data types
miller-lab
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331 Contig6_chr38_16185744_16186110 325 A G 74.9 chr38 16186061 A 5 0 2 42 3 0 2 36 9 0 2 54 7 0 2 48 1 0 2 30 12 0 2 63 Y 40 +99. 0
d4ec09e8079f New data types
miller-lab
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332 Contig265_chrX_2689247_2689484 114 C G 103.0 chrX 2689356 C 11 0 2 60 9 0 2 54 13 0 2 66 16 0 2 75 14 0 2 69 10 0 2 57 N 2 9.232 1
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
333 Contig122_chrX_6026976_6027327 330 C T 79.4 chrX 6027303 C 3 0 2 36 3 0 2 36 3 0 2 36 4 0 2 39 3 0 2 36 6 0 2 45 Y 30 +99. 0
d4ec09e8079f New data types
miller-lab
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diff changeset
334 Contig113_chrX_26287829_26288398 385 C T 59.6 chrX 26288213 C 9 0 2 54 9 0 2 54 17 0 2 78 11 0 2 60 3 8 1 44 4 0 2 39 N 13 0.077 0
d4ec09e8079f New data types
miller-lab
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diff changeset
335 Contig237_chrX_31256648_31257654 165 T A 246.0 chrX 31256814 T 7 0 2 48 23 0 2 96 19 0 2 84 17 0 2 78 14 0 2 69 8 0 2 51 Y 37 1.481 0
d4ec09e8079f New data types
miller-lab
parents:
diff changeset
336 Contig90_chrX_57430715_57431566 548 C T 116.0 chrX 57431266 T 9 0 2 54 18 0 2 81 13 0 2 66 14 0 2 69 8 0 2 54 7 0 2 48 Y 261 0.154 1
d4ec09e8079f New data types
miller-lab
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diff changeset
337 Contig133_chrX_84833782_84834125 182 G A 69.7 chrX 84833962 G 5 0 2 42 18 0 2 81 12 0 2 63 19 0 2 84 6 3 1 27 7 0 2 48 N 619 0.278 0
d4ec09e8079f New data types
miller-lab
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diff changeset
338 Contig125_chrX_93319363_93320877 349 A C 145.0 chrX 93319721 A 4 0 2 39 6 0 2 45 11 0 2 60 10 0 2 57 13 0 2 66 6 0 2 45 Y 59 1.686 0